Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

p(tetR)
BBa_R0040 Version 1 (Component)
TetR repressible promoter

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

P(Lac) IQ
BBa_I14032 Version 1 (Component)
promoter P(Lac) IQ

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

Cat
BBa_I14033 Version 1 (Component)
P(Cat)

lasR
BBa_C0179 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(no LVA)

BBa_K823003
BBa_K823003 Version 1 (Component)
P_veg

RhI
BBa_I14017 Version 1 (Component)
P(Rhl)

Las CIO
BBa_I14016 Version 1 (Component)
P(Las) CIO

rhlR
BBa_C0071 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (+LVA)

rhIR
BBa_C0171 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)

BBa_K1943031
BBa_K1943031 Version 1 (Component)
two P system-5

BBa_J61002
BBa_J61002 Version 1 (Component)
EX-Ptet-S-rbsRFP-P "RFP reporter"

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

Bla
BBa_I14018 Version 1 (Component)
P(Bla)

phaC1-A-B1
BBa_K934001 Version 1 (Component)
phaC1-A-B1 [P(3HB) synthesis]

BBa_K1789012
BBa_K1789012 Version 1 (Component)
P+R

BBa_K1943029
BBa_K1943029 Version 1 (Component)
two P system-3

BBa_K1943027
BBa_K1943027 Version 1 (Component)
two P system-1

BBa_K1943032
BBa_K1943032 Version 1 (Component)
two P system-6

BBa_K1943033
BBa_K1943033 Version 1 (Component)
two P system-7

BBa_K1943028
BBa_K1943028 Version 1 (Component)
two P system-2

BBa_K1943034
BBa_K1943034 Version 1 (Component)
two P system-7

BBa_K1943030
BBa_K1943030 Version 1 (Component)
two P system-4

las TetO
BBa_I14015 Version 1 (Component)
P(Las) TetO

BBa_K1334002
BBa_K1334002 Version 1 (Component)
HxlR+P-formaldehyde

BBa_K390018
BBa_K390018 Version 1 (Component)
sigA promoter, 5'UTR, and RBS

Kat
BBa_I14034 Version 1 (Component)
P(Kat)

P-phlF
BBa_K1725000 Version 1 (Component)
PhlF repressible promoter

p(osmY)
BBa_J45992 Version 1 (Component)
Full-length stationary phase osmY promoter

BBa_K1497028
BBa_K1497028 Version 1 (Component)
Scaffold (P-P)

CspC
BBa_K538004 Version 1 (Component)
CspC (P. irgensii)

BBa_K390017
BBa_K390017 Version 1 (Component)
psbA2 promoter, 5'UTR, and RBS

BBa_M36009
BBa_M36009 Version 1 (Component)
5' Bicistronic UTR (strong), does not include ATG start

Subtilin P
BBa_K104001 Version 1 (Component)
Sensor for small peptide Subtilin

BBa_K823002
BBa_K823002 Version 1 (Component)
P_lepA

BBa_I712011
BBa_I712011 Version 1 (Component)
CUb (split ubiquitin system)