Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
mChBBa_J176005 Version 1 (Component)mCh
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
BBa_K1199045BBa_K1199045 Version 1 (Component)LinA-F2A-LinB F2A can cleave LinA and LinB to mediate gamma-HCH
PBS_F24PBS_F24 Version 1 (Component) ecfpBBa_E0020 Version 1 (Component)engineered cyan fluorescent protein derived from A. victoria GFP
Lin-2BO_9115 Version 1 (Component) Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K1199002BBa_K1199002 Version 1 (Component)LinA gamma-HCH->1,3,4,6-tetrachloro-1,4-cyclohexadiene
ECFPBBa_E0022 Version 1 (Component)enhanced cyan fluorescent protein derived from A. victoria GFP
linkBBa_I13000 Version 1 (Component)linker sequence between lux systems
BBa_J52014BBa_J52014 Version 1 (Component)NFkB-dnMyD88-link-rLuc
BBa_K2050421BBa_K2050421 Version 1 (Component)Thosea Asigna Virus 2A peptide linker (T2A)
CatBBa_I14033 Version 1 (Component)P(Cat)
BBa_K1199001BBa_K1199001 Version 1 (Component)LinA γ-HCH->1,3,4,6-tetrachloro-1,4-cyclohexadiene
BBa_K323061BBa_K323061 Version 1 (Component)YFP link CFP
T2ABBa_K1993019 Version 1 (Component)T2A
LigABBa_K525710 Version 1 (Component)DNA ligase from Escherichia coli (LigA) with PT7, RBS and His-tag
BBa_K323038BBa_K323038 Version 1 (Component)ATG cYFP link Jazz link His stop
BBa_K323020BBa_K323020 Version 1 (Component)ATG cYFP link Blues link His stop
BBa_K323019BBa_K323019 Version 1 (Component)ATG cCFP link Blues link His stop
BBa_K323018BBa_K323018 Version 1 (Component)ATG cYFP link PBSII link His stop
BBa_K323032BBa_K323032 Version 1 (Component)C-split fragment of mCitrine with ATG and link
BBa_I717014BBa_I717014 Version 1 (Component)TF to FP link
BBa_K323010BBa_K323010 Version 1 (Component)ATG cCFP link Zif268 link His stop
BBa_K323057BBa_K323057 Version 1 (Component)ATG cCFP link PBSII link His stop
BBa_K323064BBa_K323064 Version 1 (Component)CMV ATG cCFP link Jazz link His stop