Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

K
BBa_J176012 Version 1 (Component)
Kozak

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K165002
BBa_K165002 Version 1 (Component)
Kozak sequence (yeast RBS)

SBFP2
BBa_K156010 Version 1 (Component)
SBFP2 (strongly enhanced blue fluorescent protein)

BBa_K1918109
BBa_K1918109 Version 1 (Component)
TRE-Kozak-EBFP2

BBa_K809601
BBa_K809601 Version 1 (Component)
GAL promoter (kozak) without start codon ATG

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

BBa_K1918100
BBa_K1918100 Version 1 (Component)
TRE-Kozak-EBFP2N(1-154)

BBa_K1918102
BBa_K1918102 Version 1 (Component)
TRE-Kozak-EBFP2C(155-238)

BBa_K1918101
BBa_K1918101 Version 1 (Component)
TRE-Kozak-EBFP2N(1-154)

BBa_K1918103
BBa_K1918103 Version 1 (Component)
TRE-Kozak-EBFP2N(1-154):IntN

BBa_K511100
BBa_K511100 Version 1 (Component)
EBFP2 MammoBlock

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

MFa1-Kozak
BBa_K792001 Version 1 (Component)
Kozak sequence from yeast α-factor mating pheromone (MFα1)

BBa_K1918108
BBa_K1918108 Version 1 (Component)
CMV-Kozak-EBFP2N(1-154)

BBa_K1918105
BBa_K1918105 Version 1 (Component)
CMV-Kozak-EBFP2C(155-238)

BBa_K1918106
BBa_K1918106 Version 1 (Component)
CMV-Kozak-EBFP2N(1-154):IntN

Kozak & st
BBa_J63003 Version 1 (Component)
designed yeast Kozak sequence

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

BBa_J96033
BBa_J96033 Version 1 (Component)
EBFP2

BBa_K165046
BBa_K165046 Version 1 (Component)
pGAL1+ Kozak

BBa_M36526
BBa_M36526 Version 1 (Component)
Kozak

BBa_K779300
BBa_K779300 Version 1 (Component)
eBFP2 MammoBlock

BBa_K812032
BBa_K812032 Version 1 (Component)
mCFP with kozak sequence for eukaryotic expression

BBa_J85900
BBa_J85900 Version 1 (Component)
TRE-tight-B1-LacI-T2A-EBFP2-FF5-miRFF4

BBa_K1875001
BBa_K1875001 Version 1 (Component)
This part contains a Kozak sequence

BBa_K1918104
BBa_K1918104 Version 1 (Component)
TRE-Kozak-IntC:EBFP2C(155-238)

BBa_K863206
BBa_K863206 Version 1 (Component)
Mating factor alpha 1 with Kozak sequence

BBa_J85800
BBa_J85800 Version 1 (Component)
LacI-T2A-EBFP2-FF5-miRFF4