Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_M45014BBa_M45014 Version 1 (Component)Hairpin designed to silence canine F1 allergen 2
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_M45006BBa_M45006 Version 1 (Component)Hairpin designed to silence canine F1 allergen
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
f1 oriBBa_K314110 Version 1 (Component)f1 origin
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
Kozak & stBBa_J63003 Version 1 (Component)designed yeast Kozak sequence
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
BBa_I13579BBa_I13579 Version 1 (Component)1/2 Insert/hairpin (I13457)
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1150040BBa_K1150040 Version 1 (Component)uniCAS RNAimer to Bla Target 2
BBa_K382066BBa_K382066 Version 1 (Component)intron hairpin RNAi knockdown of Ger allergen in Basta plant vector
BBa_K382070BBa_K382070 Version 1 (Component)intron hairpin RNAi knockdown of LTP allergen in Basta plant vector
BBa_K382067BBa_K382067 Version 1 (Component)intron hairpin RNAi knockdown of Ger allergen in Kan plant vector
BBa_K382071BBa_K382071 Version 1 (Component)intron hairpin RNAi knockdown of LTP allergen in Kan plant vector
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K264001BBa_K264001 Version 1 (Component)Modular UP-element Design 2
BBa_K382069BBa_K382069 Version 1 (Component)intron hairpin RNAi knockdown of Bet v 1 allergen in Kan plant vector
BBa_K382068BBa_K382068 Version 1 (Component)intron hairpin RNAi knockdown of Bet v 1 allergen in Basta plant vector
BBa_S00162BBa_S00162 Version 1 (Component)mCherry + 3' Hairpin + Terminator
BBa_K2005021BBa_K2005021 Version 1 (Component)Poly(2)Guanine-45
BBa_K115020BBa_K115020 Version 1 (Component)RNA thermometer (ROSE hairpin 37??C)
BBa_K944003BBa_K944003 Version 1 (Component)cioA gene related to cyanide insensitivity
BBa_K944004BBa_K944004 Version 1 (Component)cioB gene related to cyanide insensitivity
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)
BBa_K1929300BBa_K1929300 Version 1 (Component)Interleukin-2 (IL-2) with designed RBS
BBa_K1763442BBa_K1763442 Version 1 (Component)MaSp1/2[1:2]-12(1C3)
BBa_K1763438BBa_K1763438 Version 1 (Component)MaSp1/2[2:1]-12(1C3)
BBa_M45001BBa_M45001 Version 1 (Component)Hairpin Loop
BBa_K1172901BBa_K1172901 Version 1 (Component)Alanine racemase from ''E. coli''