Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

NAND2-7
BBa_I732304 Version 1 (Component)
NAND Candidate (U073O22D001O47)

NAND2717
BBa_I732302 Version 1 (Component)
NAND Candidate (U073O27D001O17)

NAND01
BBa_I732303 Version 1 (Component)
NAND Candidate (U073O22D001O46)

pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

NAND2616
BBa_I732301 Version 1 (Component)
NAND Candidate (U073O26D001O16)

NAND59
BBa_I732305 Version 1 (Component)
NAND Candidate (U073O22D059O46)

NANDbeta
BBa_I732306 Version 1 (Component)
NAND Candidate (U073O11D002O22)

BBa_J33207
BBa_J33207 Version 1 (Component)
lac promoter and lacZ

NOR2
BBa_I732352 Version 1 (Component)
NOR Candidate (U035O44D001O22)

NOR1
BBa_I732351 Version 1 (Component)
NOR Candidate (U037O11D002O22)

rhII
BBa_C0070 Version 1 (Component)
autoinducer synthetase for N-butyryl-HSL (BHL) and HHL

BBa_K608002
BBa_K608002 Version 1 (Component)
strong Promoter and strong RBS

BBa_K850000
BBa_K850000 Version 1 (Component)
AGM1 gene from candida albicans

BBa_K850002
BBa_K850002 Version 1 (Component)
UAP1 gene from candida albicans

mCherry
BBa_J06702 Version 1 (Component)
mCherry, bacterial with RBS and forward terminator

BBa_K228009
BBa_K228009 Version 1 (Component)
AraC protein(reversed sequence) and Pbad promoter

BBa_K081005
BBa_K081005 Version 1 (Component)
constitutive promoter family member and RBS

BBa_K1484318
BBa_K1484318 Version 1 (Component)
Marchantia Polymorpha Candidate Promoter 1

cinR
BBa_R0078 Version 1 (Component)
Promoter (cinR and HSL regulated)

BBa_K1614013
BBa_K1614013 Version 1 (Component)
software generated kanamycin aptamer (candidate 2)

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1614017
BBa_K1614017 Version 1 (Component)
software generated kanamycin aptamer (candidate 3)

BBa_I13458
BBa_I13458 Version 1 (Component)
promoter C and arabinose C operon

BBa_K1614009
BBa_K1614009 Version 1 (Component)
software generated kanamycin aptamer (candidate 1)

BBa_K1618033
BBa_K1618033 Version 1 (Component)
Acyltransferase Candidate 1 Expression Construct

BBa_K1618034
BBa_K1618034 Version 1 (Component)
Acyltransferase Candidate 2 Expression Construct

BBa_K1618035
BBa_K1618035 Version 1 (Component)
Acyltransferase Candidate 3 Expression Construct

BBa_K1618036
BBa_K1618036 Version 1 (Component)
Acyltransferase Candidate 4 Expression Construct

cinR
BBa_R0077 Version 1 (Component)
Promoter (cinR and HSL regulated, RBS+)

BBa_K208010
BBa_K208010 Version 1 (Component)
Lac Promoter (BBa_R0010) and RBS (B0034)

Pveg-spoVG
BBa_K143053 Version 1 (Component)
Promoter Pveg and RBS spoVG for B. subtilis

pAND
BBa_J58100 Version 1 (Component)
AND-type promoter synergistically activated by cI and CRP

BBa_K1618031
BBa_K1618031 Version 1 (Component)
Acyltransferase Candidate 3 -Fused to GFP -Expression Construct

BBa_K1618030
BBa_K1618030 Version 1 (Component)
Acyltransferase Candidate 2 -Fused to GFP -Expression Construct

BBa_K1618032
BBa_K1618032 Version 1 (Component)
Acyltransferase Candidate 4 -Fused to GFP -Expression Construct

BBa_K1618029
BBa_K1618029 Version 1 (Component)
Acyltransferase Candidate 1 -Fused to GFP -Expression Construct

BBa_K850001
BBa_K850001 Version 1 (Component)
NAG1 gene from candida albicans