Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
Scar 25BBa_B0105 Version 1 (Component)RFC 25 Scar Sequence
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
RFC 37BBa_K245009 Version 1 (Component)RFC 37 Scar Sequence
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K2170130BBa_K2170130 Version 1 (Component)Secretory Nanoluciferase (BM40_NanoLuc_StrepTag_polyA) in RFC[10]
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K2170131BBa_K2170131 Version 1 (Component)Secretory Nanoluciferase (MiniP_BM40_NanoLuc_StrepTag_polyA) in RFC[10]
BBa_K2170044BBa_K2170044 Version 1 (Component)Secretory Nanoluciferase (8x HRE_Mini P_BM40_NanoLuc_StrepTag_PolyA)
BBa_K2170043BBa_K2170043 Version 1 (Component)Secretory Nanoluciferase (6x HRE_Mini P_BM40_NanoLuc_StrepTag_PolyA)
BBa_K2170041BBa_K2170041 Version 1 (Component)Secretory Nanoluciferase (2x HRE_Mini P_BM40_NanoLuc_StrepTag_PolyA)
BBa_K2170042BBa_K2170042 Version 1 (Component)Secretory Nanoluciferase (4x HRE_Mini P_BM40_NanoLuc_StrepTag_PolyA)
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
BBa_K081014BBa_K081014 Version 1 (Component)RFP protein generator - PoPS->RFP
BBa_K1051004BBa_K1051004 Version 1 (Component)Stop codon free mOrange in RFC[23] standard
BBa_K2170211BBa_K2170211 Version 1 (Component)Secretory biotin ligase BirA (IRES_Kozak_IgKappa_BirA_StrepDEL) in RFC[10]
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
RFC 37BBa_K245119 Version 1 (Component)P2
BsaI ->BBa_K1362425 Version 1 (Component)BsaI restriction site for RFC[???] cloning (in part in prefix)
mRFPrBBa_J31008 Version 1 (Component)RFP reverse
BBa_K1051002BBa_K1051002 Version 1 (Component)Stop codon free EYFP in RFC[23] standard
RFC 37BBa_K245131 Version 1 (Component)ELST
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
BBa_K1159006BBa_K1159006 Version 1 (Component)Secretory NanoLuc Luciferase (IgKappa-SigP_nLuc) in RFC[25] N-Part
BBa_K2170010BBa_K2170010 Version 1 (Component)Secretory Nanoluciferase with C-terminal StrepTag (CMV_BM40_NanoLuc_StrepTag_polyA)
BBa_K2170011BBa_K2170011 Version 1 (Component)Secretory Nanoluciferase with C-terminal StrepTag (CMV_EGFR_NanoLuc_StrepTag_polyA)
BBa_K2170012BBa_K2170012 Version 1 (Component)Secretory Nanoluciferase with C-terminal StrepTag (CMV_IgKappa_NanoLuc_StrepTag_polyA)
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
BBa_K2170013BBa_K2170013 Version 1 (Component)Non-secretory Nanoluciferase with C-terminal StrepTag (CMV_NanoLuc_StrepTag_polyA)
BBa_K1051001BBa_K1051001 Version 1 (Component)Stop codon free ECFP in RFC[23] standard
BBa_K1321339BBa_K1321339 Version 1 (Component)CBDcenA+Linker, RFC 25 standard
BBa_K2170213BBa_K2170213 Version 1 (Component)Minipromotor in RFC[10]
BBa_B1010BBa_B1010 Version 1 (Component)Terninator (artificial, large, %T~<10)
BBa_K2170100BBa_K2170100 Version 1 (Component)Nanoluciferase with C-terminal StrepTag (NanoLuc_StrepTag) in RFC[25]
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
BBa_K1321342BBa_K1321342 Version 1 (Component)sfGFP fused to CBDcex in RFC 25
BBa_K1321009BBa_K1321009 Version 1 (Component)Nickel Binding Protein (NiBP) Freiburg format (RFC[25])
BBa_K1159204BBa_K1159204 Version 1 (Component)Secretory SpyCatcher (SERK-SigP_SpyCatcher) in RFC[25] N-Part
BBa_K1159205BBa_K1159205 Version 1 (Component)Secretory SpyTag (SERK-SigP_SpyTag) in RFC[25] N-Part
BBa_K199118BBa_K199118 Version 1 (Component)T7 promoter + RBS + RFP
BBa_K2170150BBa_K2170150 Version 1 (Component)Improved Killswitch (CMV-GMK_TK90) in RFC[10]
BBa_K1159203BBa_K1159203 Version 1 (Component)Secretory SpyTag (IgKappa-SigP_SpyTag) in RFC[25] N-Part
BBa_K1159202BBa_K1159202 Version 1 (Component)Secretory SpyCatcher (IgKappa-SigP_SpyCatcher) in RFC[25] N-Part