SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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lacZ-alpha
BBa_I732006 Version 1 (Component)
lacZ alpha fragment

Public

BBa_K1694003
BBa_K1694003 Version 1 (Component)
Single-chain variable fragment (Anti-VEGF)

Public

BBa_K1694005
BBa_K1694005 Version 1 (Component)
Single-chain variable fragment (Anti-HER2)

Public

BBa_K1694004
BBa_K1694004 Version 1 (Component)
Single-chain variable fragment (Anti-EGFR)

Public

BBa_K823003
BBa_K823003 Version 1 (Component)
P<sub>veg</sub>

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BBa_K1694013
BBa_K1694013 Version 1 (Component)
OmpA-scFv(Anti-VEGF)

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Pveg
BBa_K143012 Version 1 (Component)
Promoter veg a constitutive promoter for B. subtilis

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BBa_J36843
BBa_J36843 Version 1 (Component)
Streptavidin, single-chain dimer + His6 tag (no start codon)

Public

BBa_K1150043
BBa_K1150043 Version 1 (Component)
uniCAS RNAimer multiple targets to VEGF 2 and VEGF 3

Public

BBa_K1391001
BBa_K1391001 Version 1 (Component)
Gantenerumab Variable Human Ig-M Light Chain

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BBa_K1391000
BBa_K1391000 Version 1 (Component)
Gantenerumab Variable Human Ig-M Heavy Chain

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rrnO_shim
rrnO_shim Version (Component)

Public

Shim_PspaRK
Shim_PspaRK Version (Component)

Public

Shim_SpaR
Shim_SpaR Version (Component)

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BBa_J120031
BBa_J120031 Version 1 (Component)
Anti-ADAM 17 antibody variable region of light chain (Unknown nucleotide sequence)

Public

BBa_J120024
BBa_J120024 Version 1 (Component)
Anti-ADAM 17 antibody variable region of heavy chain (Unknown nucleotide sequence)

Public

Bt-ALDH
BBa_K398006 Version 1 (Component)
Medium-Chain Aldehyde Dehydrogenase

Public

BBa_K1940000
BBa_K1940000 Version 1 (Component)
anti-microRNA-34c

Public

BBa_K1694023
BBa_K1694023 Version 1 (Component)
Pcons+B0034+Lpp-OmpA-N+scFv(Anti-VEGF)

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Shim_SpaR
Shim_SpaR_ds Version (Component)

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Shim_RBS
Shim_RBS_ds Version (Component)

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BBa_K351002
BBa_K351002 Version 1 (Component)
Single Chain Antibody for

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BBa_K157003
BBa_K157003 Version 1 (Component)
Anti-NIP singlechain Fv-Fragment

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BAT2
BBa_J45008 Version 1 (Component)
branched-chain amino acid transaminase (BAT2); converts leucine to alpha-ketoisocaproate

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BBa_K2109101
BBa_K2109101 Version 1 (Component)
Single-chain antibody selection construct

Public

lacZ a
BBa_E0033 Version 1 (Component)
LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)

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BBa_K1150038
BBa_K1150038 Version 1 (Component)
uniCAS RNAimer to target VEGF3

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BBa_K1150037
BBa_K1150037 Version 1 (Component)
uniCAS RNaimer to target VEGF2

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BBa_I732018
BBa_I732018 Version 1 (Component)
lacZ alpha fragment (RBS+ TERM-)

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BBa_K1150039
BBa_K1150039 Version 1 (Component)
uniCAS RNAimer to target VEGF4

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BBa_K2170205
BBa_K2170205 Version 1 (Component)
Single chain avidin (scAvidin) in RFC[25]

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UNIK Antif
BBa_K1825000 Version 1 (Component)
UNIK antifreeze protein

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//terminator/single
terminator_single Version 1 (Collection)

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BBa_K1694033
BBa_K1694033 Version 1 (Component)
Pcons+B0034+Lpp-OmpA-N+scFv(Anti-VEGF)+B0030+GFP+J61048

Public

BBa_K1893014
BBa_K1893014 Version 1 (Component)
anti-STAR

Public

BBa_K1150036
BBa_K1150036 Version 1 (Component)
uniCAS RNAimer to target VEGF1

Public

BBa_K1694053
BBa_K1694053 Version 1 (Component)
Pcons+B0034+Lpp-OmpA-N+scFv(Anti-VEGF)+B0034+amilCP+B0015

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SINGLE
BBa_K1433019 Version 1 (Component)
P-A-T-T-B-B0034-GFP-T

Public

BBa_I732020
BBa_I732020 Version 1 (Component)
lacZ alpha (fragment RBS+ TERM+)

Public

BBa_K2170031
BBa_K2170031 Version 1 (Component)
VEGF (CMV_VEGF-p2A_PDGF_PolyA)

Public

BBa_K782061
BBa_K782061 Version 1 (Component)
VEGF-p2a-PDGF

Public

BBa_K2170052
BBa_K2170052 Version 1 (Component)
Secretory prokaryotic biotin binding receptor with single chain avidin

Public

BBa_K2170002
BBa_K2170002 Version 1 (Component)
Secretory eukaryotic biotin binding receptor with single chain avidin

Public

BBa_K541505
BBa_K541505 Version 1 (Component)
limulus anti-LPS factor (LALF)

Public

BBa_J36847
BBa_J36847 Version 1 (Component)
Lpp-OmpA(46-159)-Streptavidin single-chain dimeric + His6

Public

BBa_J36845
BBa_J36845 Version 1 (Component)
Lpp-OmpA(46-66)-Streptavidin single-chain dimeric + His6

Public

antE
BO_28694 Version 1 (Component)

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