SynBioHub

Public

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Public

BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

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BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

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BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

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pT7
BBa_I719005 Version 1 (Component)
T7 Promoter

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pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

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BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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BBa_I712074
BBa_I712074 Version 1 (Component)
T7 promoter (strong promoter from T7 bacteriophage)

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T7 RBS
BBa_K1362090 Version 1 (Component)
strong T7 RBS

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SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_K1092101
BBa_K1092101 Version 1 (Component)
ssDsbA-PDZ Ligand

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BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

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BBa_B0016
BBa_B0016 Version 1 (Component)
Terminator (T7 RNAP specific, T_Phi)

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BBa_K1092009
BBa_K1092009 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-Voltage Switch

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BBa_K199118
BBa_K199118 Version 1 (Component)
T7 promoter + RBS + RFP

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BBa_K1092025
BBa_K1092025 Version 1 (Component)
T7-RBS -ssDsbA-PDZ Ligand-Voltage Switch-Laccase

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BBa_K1092007
BBa_K1092007 Version 1 (Component)
ssDsbA-PDZ Ligand-Voltage Switch

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BBa_K1092102
BBa_K1092102 Version 1 (Component)
ssDsbA-PDZ Domain

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BBa_K1092023
BBa_K1092023 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-Voltage Switch-RFP C terminus

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BBa_K1092010
BBa_K1092010 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch

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RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

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BBa_K1092011
BBa_K1092011 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand

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BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

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BBa_K1092026
BBa_K1092026 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch-Dioxygenase

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BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

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BBa_K1092008
BBa_K1092008 Version 1 (Component)
ssDsbA-PDZ Domain-Voltage Switch

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BBa_K1092024
BBa_K1092024 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch-RFP N terminus

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BBa_K1321338
BBa_K1321338 Version 1 (Component)
T7 Expression vector

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//rbs
rbs Version 1 (Collection)

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BBa_K1092016
BBa_K1092016 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-FL3 Lgt FL3

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RBS-spoVG
BBa_K143021 Version 1 (Component)
SpoVG ribosome binding site (RBS) for B. subtilis

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RBS_SpaR
RBS_SpaR Version (Component)

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RBS_SpaK
RBS_SpaK Version (Component)

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BBa_I2032
BBa_I2032 Version 1 (Component)
T7 RNA polymerase

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BBa_K1092020
BBa_K1092020 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-FL3 Lgt FL3-Laccase

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BBa_K1462480
BBa_K1462480 Version 1 (Component)
PDZ Ligand

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BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030

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BBa_K1092013
BBa_K1092013 Version 1 (Component)
T7-RBS-Voltage Switch

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RBS_SpaR_seq
RBS_SpaR_seq Version (Sequence)

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RBS_SpaK_seq
RBS_SpaK_seq Version (Sequence)

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BBa_K771003
BBa_K771003 Version 1 (Component)
Membrane Anchor 3 :ssDsbA-PDZ Ligand-LGT-SH3 Ligand

Public

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

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T7start
BBa_J18912 Version 1 (Component)
T7 promoter + RBS + START

Public

BBa_K1092015
BBa_K1092015 Version 1 (Component)
ssDsbA-PDZ Ligand-FL3 Lgt FL3

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