Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K587003
BBa_K587003 Version 1 (Component)
Tast -> Key to unlock crxst

Key 1
BBa_J01008 Version 1 (Component)
Riboregulator key 1

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

Key3
BBa_J01086 Version 1 (Component)
Key3

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

BBa_K587004
BBa_K587004 Version 1 (Component)
Tawk -> Key to unlock crxwk

Lock 1
BBa_J01010 Version 1 (Component)
Riboregulator Lock 1

BBa_J23070
BBa_J23070 Version 1 (Component)
Ser2 derived key

BBa_K145301
BBa_K145301 Version 1 (Component)
lacI controlled by key/lock

BBa_K145215
BBa_K145215 Version 1 (Component)
FILTER Key (TetR promoter + key)

BBa_K145300
BBa_K145300 Version 1 (Component)
Lactonase controlled by key/lock

BBa_K145303
BBa_K145303 Version 1 (Component)
GFP generator controlled by key/lock

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K587002
BBa_K587002 Version 1 (Component)
Crxst -> Lock sequence for concentration mechanism

BBa_J01066
BBa_J01066 Version 1 (Component)
TEST arabinose inducible key 1 [pBad/araC][Key1]

BBa_K145302
BBa_K145302 Version 1 (Component)
luxI generator controlled by key/lock

KMR
BBa_K175032 Version 1 (Component)
Key for lock of medium (K175031) RBS (B0032) from the lock/key library TUD09

Key 2
BBa_J01009 Version 1 (Component)
Riboregulator Key 2

BBa_K587007
BBa_K587007 Version 1 (Component)
Crxst -> Lock sequence for low concentration mechanism

BBa_J01067
BBa_J01067 Version 1 (Component)
TEST arabinose inducible key 2 [pBad/araC][Key2]

key
BBa_K1930000 Version 1 (Component)
Encryption key sequence

BBa_J01020
BBa_J01020 Version 1 (Component)
OnKey1 = [Key promoter KP3][key1]

KWR
BBa_K175030 Version 1 (Component)
Key for lock of weak (K175029) RBS (B0031) from the lock/key library TUD09

LMR
BBa_K175031 Version 1 (Component)
Lock for medium RBS (B0032) from the lock/key library TUD09

BBa_K216005
BBa_K216005 Version 1 (Component)
PyeaR promoter, responsive to nitrate, nitrite and nitric oxide

KP3
BBa_J01006 Version 1 (Component)
Key Promoter absorbs 3

RFC105 Z
BBa_K1362421 Version 1 (Component)
C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z

Zif23
BBa_R2000 Version 1 (Component)
Promoter, Zif23 regulated, test: between

input-lacI
BBa_S03334 Version 1 (Component)
Constitutive lacI-production to block cI production.

PelB
BBa_J32015 Version 1 (Component)
PelB leader sequence; directs protein to E. coli periplasmic membrane

LWR
BBa_K175029 Version 1 (Component)
Lock for weak RBS (B0031) from the lock/key library TUD09

[pTET][loc
BBa_J01060 Version 1 (Component)
OnLock1 = [pTet][Lock1]

[pTet][key
BBa_J01129 Version 1 (Component)
[pTet][key3]