Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_K808011
BBa_K808011 Version 1 (Component)
tphA1: reduces the tphA2A3 complex

BBa_K808013
BBa_K808013 Version 1 (Component)
tphA3: Catalyzes together with tphA2 TPA to DCD

BBa_K808012
BBa_K808012 Version 1 (Component)
tphA2: Catalyzes together with tphA3 TPA to DCD

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

Coupling
Coupling Version 1 (Component)
Translational coupler

BBa_K1598001
BBa_K1598001 Version 1 (Component)
TPH1 (Tryptophan hydroxylase 1)

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K199045
BBa_K199045 Version 1 (Component)
CUACC tRNA Suppressor (Produces Serine)

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_K199048
BBa_K199048 Version 1 (Component)
CCACC tRNA Suppressor (Produces Serine)

BBa_K199002
BBa_K199002 Version 1 (Component)
CCACU tRNA Suppressor (Produces Serine)

BBa_K199016
BBa_K199016 Version 1 (Component)
CUAGC tRNA Suppressor (Produces Serine)

BBa_K223040
BBa_K223040 Version 1 (Component)
SoxR Gene: Produces the SoxR protein

BBa_K199047
BBa_K199047 Version 1 (Component)
CCAAU tRNA Suppressor (Produces Serine)

BBa_K199014
BBa_K199014 Version 1 (Component)
AGGAC tRNA Suppressor (Produces Serine)

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

BBa_K199000
BBa_K199000 Version 1 (Component)
CCCUC tRNA Suppressor (Produces Serine)

BBa_K199028
BBa_K199028 Version 1 (Component)
CGGUC tRNA Suppressor (Produces Serine)

BBa_K1667000
BBa_K1667000 Version 1 (Component)
thermo-regulated opdA coupled with RecA-reduced ccdB

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase

BBa_I742134
BBa_I742134 Version 1 (Component)
Recombinase XerC of the XerCD complex.

pir
BBa_I716102 Version 1 (Component)
pir (Induces the R6K Origin)

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

BBa_K199046
BBa_K199046 Version 1 (Component)
CUACU tRNA Suppressor (Produces Serine)

BBa_K1598005
BBa_K1598005 Version 1 (Component)
pYear-RBS-TPH1-6xHis-Terminator

RBS-GFP-Te
BBa_I763020 Version 1 (Component)
RBS-GFP (+LVA Tag)-Terminators

BBa_K1667005
BBa_K1667005 Version 1 (Component)
Thermo-regulated opdA Coupled with RecA-reduced ccdB

BBa_K199001
BBa_K199001 Version 1 (Component)
CUAGU tRNA Suppressor (Produces Serine)