iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
scarBBa_J176041 Version 1 (Component)Silver scar
Scar 25BBa_B0105 Version 1 (Component)RFC 25 Scar Sequence
spaRSpaR Version (Component) Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
scarBBa_K112999 Version 1 (Component)BBb1 scar sequence
RFC 37BBa_K245009 Version 1 (Component)RFC 37 Scar Sequence
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
BBa_K2066527BBa_K2066527 Version 1 (Component)B0034 with scar TACTAG
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
PcarBBa_K861171 Version 1 (Component)Pcar, synthetic promoter repressed by CRP
SX scarBBa_G0002 Version 1 (Component)SpeI/XbaI mixed site
BBa_K1159993BBa_K1159993 Version 1 (Component)25/25 Assembly Scar
RFC 37BBa_K245080 Version 1 (Component)scar Xba/Spe NgoMIV
BBa_K106017BBa_K106017 Version 1 (Component)AarI "D" site scar sequence
A scarBBa_K106015 Version 1 (Component)AarI "A" site scar sequence
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
scarBBa_G0004 Version 1 (Component)SpeI/NheI mixed site
scarBBa_G0003 Version 1 (Component)NheI/XbaI mixed site
phaC1-A-B1BBa_K934001 Version 1 (Component)phaC1-A-B1 [P(3HB) synthesis]
scarBBa_G0001 Version 1 (Component)XbaI/SpeI mixed site, reverse
BBa_K1159996BBa_K1159996 Version 1 (Component)25/10 NC Assembly Scar
BBa_K592003BBa_K592003 Version 1 (Component)PcpcG2 promoter, ccaR-regulated
BBa_K1833996BBa_K1833996 Version 1 (Component)Oligonucleotide synthesis scar
scarBBa_K300077 Version 1 (Component)RFC23 scar sequence
scarBBa_K300076 Version 1 (Component)RFC23-RFC10 mixed scar
BBa_K1833997BBa_K1833997 Version 1 (Component)T3 promoter as annealed oligonucleotides
scarBBa_G0005 Version 1 (Component)NheI/SpeI mixed site
BBa_K1031410BBa_K1031410 Version 1 (Component)HcaR-Terminator
scarBBa_G0006 Version 1 (Component)XbaI/NheI mixed site
scarBBa_K300994 Version 1 (Component)SpeI/AvrII mixed site (when SpeI comes from RFC10 Prefix) - rev
scarBBa_K300995 Version 1 (Component)AvrII/XbaI mixed site (when XbaI comes from RFC10 Prefix) - rev