Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_I15009BBa_I15009 Version 1 (Component)phycocyanobilin:ferredoxin oxidoreductase (PcyA) from synechocystis
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_I723028BBa_I723028 Version 1 (Component)PCA biosynthesis operon
PcarBBa_K861171 Version 1 (Component)Pcar, synthetic promoter repressed by CRP
BBa_K322123BBa_K322123 Version 1 (Component)Phycobilin synthesis operon without terminator
BBa_I746104BBa_I746104 Version 1 (Component)P2 promoter in agr operon from S. aureus
BBa_I15007BBa_I15007 Version 1 (Component)ho1 and pcyA (PCB biosynthetic genes) ORFs from synechocystis
Operon2BBa_K808007 Version 1 (Component)putative terephtalate uptake operon2
BBa_K081021BBa_K081021 Version 1 (Component)pcyA protein generator - PoPS->pcyA
BBa_I769104BBa_I769104 Version 1 (Component)Feruloyl CoA hydratase for vanillin biosythesis
BBa_K1026014BBa_K1026014 Version 1 (Component)Constitutively Expressed pcyA Operon
BBa_K909000BBa_K909000 Version 1 (Component)Phycocyanobilin synthesis operon
PTABBa_K901016 Version 1 (Component)Phosphotransacetylase (PTA) from <i>Escherichia coli</i>
BBa_K1499000BBa_K1499000 Version 1 (Component)wssF gene from wss operon
BBa_K527002BBa_K527002 Version 1 (Component)Biosynthesis/Oximes/CYP79B1/Plug 'n' Play
hycApBBa_K778000 Version 1 (Component)hycAp: Promoter of hyc operon activated by FhlA
BBa_K566023BBa_K566023 Version 1 (Component)pcyA gene (constitutive expression)
PrFeBBa_J3902 Version 1 (Component)PrFe (PI + PII rus operon)
BBa_K769020BBa_K769020 Version 1 (Component)lux operon(K769011) + lumP(K769019)
BBa_K769022BBa_K769022 Version 1 (Component)lux operon(K769011) + GFP(I13522)
BBa_K1795024BBa_K1795024 Version 1 (Component)KanR Operon under R0010
BBa_K729003BBa_K729003 Version 1 (Component)csgBAEFG operon
BBa_K822000BBa_K822000 Version 1 (Component)lldPRD operon promoter + RBS from E. coli
BBa_K804005BBa_K804005 Version 1 (Component)DszC coding gene (from DszABC operon)
BBa_K081017BBa_K081017 Version 1 (Component)pcyA protein generator (TERM-)
PctBBa_K2042000 Version 1 (Component)Propionate CoA transferase for P. putida
BBa_K1897037BBa_K1897037 Version 1 (Component)Modified lldPRD operon promoter
BBa_K325909BBa_K325909 Version 1 (Component)Lux Operon (under pBAD)<BR><i>Vibrio Fischeri</i>
BBa_K2013012BBa_K2013012 Version 1 (Component)PCA 3.4-dioxygenase
BBa_K2013013BBa_K2013013 Version 1 (Component)PCA 3.4-dioxygenase