ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
Prm +BBa_I12007 Version 1 (Component)Modified lambda Prm promoter (OR-3 obliterated)
ProPro Version (Component) Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
BBa_K1618024BBa_K1618024 Version 1 (Component)Pro-GlgB-Rv3034c
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
Pro1Pro1 Version (Component) pREBBa_K116603 Version 1 (Component)pRE promoter from λ phage
Rv3034cBBa_K1618003 Version 1 (Component)Rv3034c without inducible promoter
ProGlgBRv3BBa_K1618027 Version 1 (Component)GlgB-Rv3037c with IPTG-inducible promoter
BBa_K118016BBa_K118016 Version 1 (Component)glgC16 (glgC with G336D substitution)
ProGlgBRv3BBa_K1618023 Version 1 (Component)GlgB-Rv3030 with IPTG-inducible promoter
BBa_K1618006BBa_K1618006 Version 1 (Component)pSB1C3-Pro-Rv3030
Rv3037cBBa_K1618004 Version 1 (Component)Rv3037c without inducible promoter
glgBBO_32632 Version 1 (Component) GlgBBBa_K1618000 Version 1 (Component)GlgB without inducible promoter
GlgBBO_26653 Version 1 (Component) BBa_P10001BBa_P10001 Version 1 (Component)Pro+5U_At6GAL4UAS
BBa_P10002BBa_P10002 Version 1 (Component)Pro+5U_AtUbi10
Rv3030BBa_K1618002 Version 1 (Component)Rv3030 without inducible promoter
BBa_K1045010BBa_K1045010 Version 1 (Component)RBS BBa_B0034 with inversed Pre- and Suffix
ProGlgBBBa_K1618022 Version 1 (Component)GlgB with IPTG-inducible promoter
BBa_K118015BBa_K118015 Version 1 (Component)glgC coding sequence encoding ADP-glucose pyrophosphorylase
lux pRBBa_R1062 Version 1 (Component)Promoter, Standard (luxR and HSL regulated -- lux pR)<br>
BBa_K118018BBa_K118018 Version 1 (Component)rbs+glgC16 (glgC with G336D substitution)
BBa_K118017BBa_K118017 Version 1 (Component)rbs+glgC (ADP-glucose pyrophosphorylase)
BBa_I714889BBa_I714889 Version 1 (Component)OR21 of PR and PRM
BBa_I746361BBa_I746361 Version 1 (Component)PO promoter from P2 phage
BBa_I759002BBa_I759002 Version 1 (Component)pTet-spacer-cro