ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

YF1
BBa_K592004 Version 1 (Component)
YF1 blue-light sensor protein

YFP
BBa_K592101 Version 1 (Component)
Yellow Fluorescent Protein (YFP)

BBa_K209402
BBa_K209402 Version 1 (Component)
AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]

yfp
BBa_K165005 Version 1 (Component)
Venus YFP, yeast optimized for fusion

BBa_K770000
BBa_K770000 Version 1 (Component)
ProC-YF1

BBa_K776017
BBa_K776017 Version 1 (Component)
Prom J23104 + PrrA + PrrB + PrrC + DT

BBa_K592016
BBa_K592016 Version 1 (Component)
B0034-YF1-B0034-FixJ, blue light sensor and RR with RBS

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_P10001
BBa_P10001 Version 1 (Component)
Pro+5U_At6GAL4UAS

BBa_P10002
BBa_P10002 Version 1 (Component)
Pro+5U_AtUbi10

YF1
BBa_K1053210 Version 1 (Component)
RBS-YF1/FixJ-DT

BBa_K249008
BBa_K249008 Version 1 (Component)
YFP with N-terminal Arganine Tag

BBa_J176006
BBa_J176006 Version 1 (Component)
YFP

SgsE | YFP
BBa_K525305 Version 1 (Component)
Fusion Protein of S-Layer SgsE and mCitrine

BBa_K776004
BBa_K776004 Version 1 (Component)
PrrC

BBa_K1618011
BBa_K1618011 Version 1 (Component)
Pro-GlgX

BBa_K091204
BBa_K091204 Version 1 (Component)
Prom-LuxR-TT

BBa_K1741012
BBa_K1741012 Version 1 (Component)
sfGFP under proC promoter

BBa_K1475899
BBa_K1475899 Version 1 (Component)
prom

BBa_K952003
BBa_K952003 Version 1 (Component)
B0034-YF1-B0034-FixJ-PfixK2-amilGFP

BBa_K776012
BBa_K776012 Version 1 (Component)
PrrC DT

BBa_K776008
BBa_K776008 Version 1 (Component)
RBS + PrrC

BBa_I13001
BBa_I13001 Version 1 (Component)
RBS B0030 w/ YFP (-LVA) TT

Tat PROM
BBa_K895000 Version 1 (Component)
Eco_Ptat2

BBa_K776013
BBa_K776013 Version 1 (Component)
Prom J23104 + AppA

BBa_K776015
BBa_K776015 Version 1 (Component)
PrrA/PrrB/PrrC

FixJ
BBa_K592005 Version 1 (Component)
FixJ, the response regulator to YF1

BBa_K091205
BBa_K091205 Version 1 (Component)
Prom-LasR-TT

BBa_K091206
BBa_K091206 Version 1 (Component)
Prom-LuxR-TT-Prom-LasR-TT