Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

JAMT
BBa_J45003 Version 1 (Component)
SAM:jasmonic acid carboxyl methyltransferase; converts jasmonic acid to jasmine odor

BSMT1
BBa_J45004 Version 1 (Component)
SAM:benzoic acid/salicylic acid carboxyl methyltransferase I; converts salicylic acid to methyl sali

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BAT2
BBa_J45008 Version 1 (Component)
branched-chain amino acid transaminase (BAT2); converts leucine to alpha-ketoisocaproate

BAMT
BBa_J45002 Version 1 (Component)
SAM:benzoic acid carboxyl methyltransferase; converts benzoic acid to methyl benzoate (floral odor)

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

RFP2
BBa_I715023 Version 1 (Component)
Carboxyl portion of RFP

BBa_K1403006
BBa_K1403006 Version 1 (Component)
Jasmonic acid carboxyl methyltransferase (JMT) expression cassette

ATF1
BBa_J45014 Version 1 (Component)
alcohol acetyltransferase I; converts isoamyl alcohol to isoamyl acetate (banana odor)

SAMT
BBa_J45001 Version 1 (Component)
SAM:salicylic acid carboxyl methyltransferase; converts salicylic acid to methyl salicylate (winter

GFP2
BBa_I715020 Version 1 (Component)
Carboxyl Half of GFP (aka GFP2)

SAMT
BBa_J45005 Version 1 (Component)
SAM:salicylic acid carboxyl methyltransferase; converts salicylic acid to methyl salicylate (winterg

BSMT2
BBa_J45007 Version 1 (Component)
SAM:benzoic acid/salicylic acid carboxyl methyltransferase II; converts salicylic acid to methyl sal

RcsB
BBa_K200000 Version 1 (Component)
Colanic acid global regulator -> RcsB

BBa_K1403009
BBa_K1403009 Version 1 (Component)
Benzoic acid/salicylic acid carboxyl methyltransferase 1 (BSMT1) expression cassette

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

BBa_K539711
BBa_K539711 Version 1 (Component)
ilvC (ketol-acid reductoisomerase NAD(P)-binding)

BBa_K2007002
BBa_K2007002 Version 1 (Component)
Drosophila melanogaster Juvenile Hormone Acid O-methyltransferase (DmJHAMT)

BBa_J45010
BBa_J45010 Version 1 (Component)
JAMT: Jasmonic acid carboxyl methyltransferase: Produces jasmine scent

BBa_K223043
BBa_K223043 Version 1 (Component)
RALDH II gene: Converts retinal into retinoic acid

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

BBa_K325210
BBa_K325210 Version 1 (Component)
Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K874000
BBa_K874000 Version 1 (Component)
M.ScaI Methyltransferase

CSAD
BBa_K2004008 Version 1 (Component)
GADL1 Acidic Amino Acid Decarboxylase

FadA
BBa_K861400 Version 1 (Component)
FadA protein coding sequence for fatty acid degradation

GFP-AID
BBa_K812010 Version 1 (Component)
GFP fused with AID-tag (ubuquitinase E3 OsTirI recoginition domain)

BBa_K902062
BBa_K902062 Version 1 (Component)
CAR (<i>Nocardia</i> carboxylic acid reductase)

BBa_K1129044
BBa_K1129044 Version 1 (Component)
Caffeic acid-o-methyltransferase under arabinose promoter

ATF1 gener
BBa_J45199 Version 1 (Component)
Banana odor enzyme (ATF1) generator

BBa_K223036
BBa_K223036 Version 1 (Component)
RALDH II gene- converts retinal into retinoic acid

BBa_K801070
BBa_K801070 Version 1 (Component)
xanthosine methyltransferase CaXMT1-strep

BBa_K1129041
BBa_K1129041 Version 1 (Component)
Caffeic acid-o-methyltransferase under pTET constitutive promoter