Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

scar
BBa_J176041 Version 1 (Component)
Silver scar

Scar 25
BBa_B0105 Version 1 (Component)
RFC 25 Scar Sequence

Scar25 ATG
BBa_K1319106 Version 1 (Component)
RFC 25 Translation Start Scar Sequence

scar
BBa_K112999 Version 1 (Component)
BBb1 scar sequence

RFC 37
BBa_K245009 Version 1 (Component)
RFC 37 Scar Sequence

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

scar
BBa_G0000 Version 1 (Component)
SpeI/XbaI scar for RBS-CDS junctions

BBa_K2066527
BBa_K2066527 Version 1 (Component)
B0034 with scar TACTAG

BBa_K1583062
BBa_K1583062 Version 1 (Component)
Scar in CsgA_Mfp3

BBa_K1583063
BBa_K1583063 Version 1 (Component)
Scar in CsgA_Mfp3

SX scar
BBa_G0002 Version 1 (Component)
SpeI/XbaI mixed site

Pcar
BBa_K861171 Version 1 (Component)
Pcar, synthetic promoter repressed by CRP

BBa_K1159993
BBa_K1159993 Version 1 (Component)
25/25 Assembly Scar

RFC 37
BBa_K245080 Version 1 (Component)
scar Xba/Spe NgoMIV

BBa_K106017
BBa_K106017 Version 1 (Component)
AarI "D" site scar sequence

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

A scar
BBa_K106015 Version 1 (Component)
AarI "A" site scar sequence

BBa_K592002
BBa_K592002 Version 1 (Component)
ccaR

scar
BBa_G0004 Version 1 (Component)
SpeI/NheI mixed site

scar
BBa_G0003 Version 1 (Component)
NheI/XbaI mixed site

scar
BBa_G0001 Version 1 (Component)
XbaI/SpeI mixed site, reverse

BBa_K2042016
BBa_K2042016 Version 1 (Component)
Non-coding scar site in between RBS and gene

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

BBa_K1159996
BBa_K1159996 Version 1 (Component)
25/10 NC Assembly Scar

BBa_K592003
BBa_K592003 Version 1 (Component)
PcpcG2 promoter, ccaR-regulated

BBa_K1583053
BBa_K1583053 Version 1 (Component)
Non-coding scar site in between promoter and RBS

BBa_K1321003
BBa_K1321003 Version 1 (Component)
Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25

scar
BBa_K300077 Version 1 (Component)
RFC23 scar sequence

BBa_K2042017
BBa_K2042017 Version 1 (Component)
Ligation scar

BBa_K1583050
BBa_K1583050 Version 1 (Component)
Scar 1

scar
BBa_K300076 Version 1 (Component)
RFC23-RFC10 mixed scar

scar
BBa_G0005 Version 1 (Component)
NheI/SpeI mixed site

BBa_K1583051
BBa_K1583051 Version 1 (Component)
Scar 2

BBa_K1890057
BBa_K1890057 Version 1 (Component)
Scar

BBa_K1031410
BBa_K1031410 Version 1 (Component)
HcaR-Terminator

scar
BBa_G0006 Version 1 (Component)
XbaI/NheI mixed site

scar
BBa_K300994 Version 1 (Component)
SpeI/AvrII mixed site (when SpeI comes from RFC10 Prefix) - rev

scar
BBa_K300995 Version 1 (Component)
AvrII/XbaI mixed site (when XbaI comes from RFC10 Prefix) - rev

BBa_K1031444
BBa_K1031444 Version 1 (Component)
J23114-HcaR

BBa_K1031441
BBa_K1031441 Version 1 (Component)
J23106-HcaR

BBa_K106016
BBa_K106016 Version 1 (Component)
AarI "B" site scar sequence