iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
BBa_J61002BBa_J61002 Version 1 (Component)EX-Ptet-S-rbsRFP-P "RFP reporter"
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
OriTFBBa_J01002 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
BBa_I13002BBa_I13002 Version 1 (Component)RBS B0031 w/ YFP (-LVA) TT
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
P22 attBBBa_I11032 Version 1 (Component)P22 ''attB'', reverse complement
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
TraJFBBa_J01000 Version 1 (Component)TraJF controls conjugative transfer in F plasmid
KanR BackwBBa_J31002 Version 1 (Component)kanamycin resistance backwards (KanB) [cf. BBa_J23012 & BBa_J31003]
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
tetA(C)bBBa_J31006 Version 1 (Component)tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]
BBa_J11003BBa_J11003 Version 1 (Component)control loop for PI controller with BBa_J11002
BBa_I11020BBa_I11020 Version 1 (Component)integrase from E. coli phage lambda
TraJRBBa_J01001 Version 1 (Component)TraJr protein (controls conjugative transfer in RP4 plasmid)
BBa_J11008BBa_J11008 Version 1 (Component)variant of J11004 (hi temp color) with weaker RBS
FurBO_11498 Version 1 (Component) BBa_I12002BBa_I12002 Version 1 (Component)Barkai-Leibler design experiment part B (434cI)
BBa_J21002BBa_J21002 Version 1 (Component)Promoter + LuxR
BBa_J11009BBa_J11009 Version 1 (Component)variant of J11005 (low temp color) with stronger RBS
BBa_J11004BBa_J11004 Version 1 (Component)temperature sensor - high temp color
BBa_J11005BBa_J11005 Version 1 (Component)temperature sensor - low temperature color
BBa_J17002BBa_J17002 Version 1 (Component)G-alpha-olf Protein Squence
BBa_J11002BBa_J11002 Version 1 (Component)improved pulse generator/PI controller
BBa_J11012BBa_J11012 Version 1 (Component)constitutive production of tetR
BBa_J119002BBa_J119002 Version 1 (Component)BsaI-GFP2-BsmBI
Spo0ABBa_J01004 Version 1 (Component)Spo0A Transcription Factor
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_J11042BBa_J11042 Version 1 (Component)Part "B" B0031+ C0056
BBa_J11007BBa_J11007 Version 1 (Component)completed 2 color temperature sensor
BBa_I11042BBa_I11042 Version 1 (Component)HK022 attB rev comp
AclIBBa_I11072 Version 1 (Component)AclI restriction enzyme site with extra nucleotides
XbaIBBa_I11082 Version 1 (Component)XbaI restriction site with extra flanking nucleotides
BBa_J11052BBa_J11052 Version 1 (Component)Part "E" R0011+ E0422
BBa_J16002BBa_J16002 Version 1 (Component)iGEM tutorial part (2)
Lambda attBBa_I11022 Version 1 (Component)Lambda attB, reverse complement
BBa_I11004BBa_I11004 Version 1 (Component)pZA3PLtet-0luc
BBa_I11008BBa_I11008 Version 1 (Component)pUHS*2Plac/ara-1 plasmid (MCS 1)