SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

Public

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_K404221
BBa_K404221 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATA-KO (ViralBrick-453-BAP)

Public

BBa_K404230
BBa_K404230 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATA-KO (ViralBrick-587KO-Empty)

Public

BBa_K404228
BBa_K404228 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATA-KO (ViralBrick-587-BLA)

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BBa_K404233
BBa_K404233 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATA-KO (ViralBrick-587KO-Z34C)

Public

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

Public

tetA(C)f
BBa_J31007 Version 1 (Component)
tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]

Public

BBa_K404226
BBa_K404226 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATA-KO (ViralBrick-587-His-Tag)

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BBa_K404231
BBa_K404231 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATA-KO (ViralBrick-587KO-His-Tag)

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BBa_K404224
BBa_K404224 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-453-Z34C)

Public

BBa_K404223
BBa_K404223 Version 1 (Component)
[AAV2]-Rep-VP123_p5-TATAless (ViralBrick-453-RGD)

Public

BBa_K404229
BBa_K404229 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-587KO-BAP)

Public

BBa_K404225
BBa_K404225 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-587-BAP)

Public

BBa_K404222
BBa_K404222 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-453-His-Tag)

Public

BFP
BBa_K592100 Version 1 (Component)
Blue Fluorescent Protein (mTagBFP)

Public

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

Public

BBa_K404236
BBa_K404236 Version 1 (Component)
[AAV2]Rep-VP123_p5TATAless (ViralBrick 453 RGD-587 HSPG-KO)

Public

BBa_K404235
BBa_K404235 Version 1 (Component)
[AAV2]Rep-VP123_p5TATAless (ViralBrick 453 Z34C-587 HSPG-KO)

Public

BBa_K404241
BBa_K404241 Version 1 (Component)
pCMV_[AAV2]VP123 (ViralBrick-453-BAP)

Public

BBa_K404020
BBa_K404020 Version 1 (Component)
ViralBrick-453-BAP

Public

BBa_K404232
BBa_K404232 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-587KO-RGD)

Public

BBa_K404227
BBa_K404227 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-587-RGD)

Public

BBa_K404201
BBa_K404201 Version 1 (Component)
ViralBrick-453-BAP

Public

tetA(C)b
BBa_J31006 Version 1 (Component)
tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]

Public

BBa_K404234
BBa_K404234 Version 1 (Component)
[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-587KO-Z34C-Spacer)

Public

BBa_K404167
BBa_K404167 Version 1 (Component)
pCMV_VP1up_NLS_mVenus_VP23(ViralBrick-587-KO-BAP)

Public

BBa_K404002
BBa_K404002 Version 1 (Component)
[AAV2]-Rep-VP123_p5-TATAless

Public

RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

Public

BBa_K404243
BBa_K404243 Version 1 (Component)
pCMV_[AAV2]VP123 (ViralBrick-453-RGD)

Public

BBa_K404244
BBa_K404244 Version 1 (Component)
pCMV_[AAV2]VP123 (ViralBrick-453-Z34C)

Public

BBa_K404246
BBa_K404246 Version 1 (Component)
pCMV_[AAV2]-VP123ex (ViralBrick-587-BAP)

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BBa_K404251
BBa_K404251 Version 1 (Component)
pCMV_[AAV2]-VP123ex (ViralBrick-587KO-BAP)

Public

BBa_K404242
BBa_K404242 Version 1 (Component)
pCMV_[AAV2]VP123 (ViralBrick-453-His-Tag)

Public

BBa_K081014
BBa_K081014 Version 1 (Component)
RFP protein generator - PoPS->RFP

Public

BBa_K315014
BBa_K315014 Version 1 (Component)
TetA (Optimized from bp 1 to 141)

Public

BBa_K404215
BBa_K404215 Version 1 (Component)
ViralBrick-453-Empty

Public

BBa_K404162
BBa_K404162 Version 1 (Component)
pCMV_Z-EGFR-1907_Middle-Linker_[AAV2]-VP23 (ViralBrick-587KO-BAP)

Public

BBa_K404203
BBa_K404203 Version 1 (Component)
ViralBrick-453-RGD

Public

BBa_K404204
BBa_K404204 Version 1 (Component)
ViralBrick-453-Z34C

Public

BBa_K315015
BBa_K315015 Version 1 (Component)
TetA gene (DeOptimized from bp 1 to 141)

Public

BBa_K404209
BBa_K404209 Version 1 (Component)
ViralBrick-587KO-BAP

Public

BBa_K404205
BBa_K404205 Version 1 (Component)
ViralBrick-587-BAP

Public

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030

Public

BBa_K404202
BBa_K404202 Version 1 (Component)
ViralBrick-453-His-Tag

Public

mRFPr
BBa_J31008 Version 1 (Component)
RFP reverse

Public

BBa_K404003
BBa_K404003 Version 1 (Component)
[AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless

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