Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_J72082BBa_J72082 Version 1 (Component){rbs.coi} in BglBrick Format
BBa_J72089BBa_J72089 Version 1 (Component){rbs.c1} in BglBrick Format
BBa_K1321009BBa_K1321009 Version 1 (Component)Nickel Binding Protein (NiBP) Freiburg format (RFC[25])
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
BBa_K112305BBa_K112305 Version 1 (Component){rbs.lambda lysozyme!} in BBb format
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
BBa_I13452BBa_I13452 Version 1 (Component)Adds another BioBrick site
BBa_J72075BBa_J72075 Version 1 (Component){Pcon-G6} in BglBrick Format
BBa_K809605BBa_K809605 Version 1 (Component)Lambda Holin in BBa format
BBa_J72091BBa_J72091 Version 1 (Component){luxCDABE} in BglBrick Format
BBa_J72087BBa_J72087 Version 1 (Component){rbs.lacZ} in BglBrick Format
BBa_J72090BBa_J72090 Version 1 (Component){vioABCDE} in BglBrick Format
BBa_J72072BBa_J72072 Version 1 (Component){rhaRS_PrhaB} in BglBrick Format
BBa_J72085BBa_J72085 Version 1 (Component){rbs.repL} in BglBrick Format
BBa_J72086BBa_J72086 Version 1 (Component){rbs.pir} in BglBrick Format
BBa_J72077BBa_J72077 Version 1 (Component){TrnpB} in BglBrick format
BBa_J72076BBa_J72076 Version 1 (Component){LPsit} in BglBrick Format
BBa_J72083BBa_J72083 Version 1 (Component){rbs.pacA} in BglBrick Format
BBa_J72073BBa_J72073 Version 1 (Component){Pcon} in BglBrick Format
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_J72049BBa_J72049 Version 1 (Component){double terminator} in BglBrick Format
BBa_J72071BBa_J72071 Version 1 (Component){araC-Pbad} in BglBrick Format
BBa_J72092BBa_J72092 Version 1 (Component){KanR Cassette} in BglBrick Format
BBa_J72074BBa_J72074 Version 1 (Component){Pcon-C5} in BglBrick Format
BBa_J72084BBa_J72084 Version 1 (Component){rbs.mRFP-3*} in BglBrick Format
BBa_J72088BBa_J72088 Version 1 (Component){rbsC.ColE2 repA} in BglBrick Format
BBa_J72080BBa_J72080 Version 1 (Component){repL, no start} in BglBrick Format
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_J72046BBa_J72046 Version 1 (Component){rbs.GFP(E0040).double terminator} in BglBrick Format
BBa_J72079BBa_J72079 Version 1 (Component){cin, no start, frameshift} in BglBrick format
BBa_J72081BBa_J72081 Version 1 (Component){p15a origin of replication} in BglBrick Format
BBa_K112311BBa_K112311 Version 1 (Component){rbs.lambda holin!} in BBb format
BBa_K112317BBa_K112317 Version 1 (Component){rbs.lambda antiholin!} in BBb format
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_M11201BBa_M11201 Version 1 (Component)pRS316 plasmid for S. cerevisiae in BioBrick format
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K1321351BBa_K1321351 Version 1 (Component)CBDcenA with linker fused to NiBP in Freiburg format (RFC 25)
BBa_K1114005BBa_K1114005 Version 1 (Component)The MoClo format of BBa_J23104 with AB fusion sites.
PrefixBBa_G00000 Version 1 (Component)BioBrick cloning site prefix
SuffixBBa_G00001 Version 1 (Component)BioBrick cloning site suffix