SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
mChBBa_J176005 Version 1 (Component)mCh
SEGA021SEGA021 Version 1 (Component)natural linear DNA.
SEGA022SEGA022 Version 1 (Component)natural linear DNA.
fshPCDBBa_J176002 Version 1 (Component)fshPCD
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
VP64BBa_J176013 Version 1 (Component)VP64
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_K779107BBa_K779107 Version 1 (Component)Input Mimic 2 - mRNA domain 2 DNA sensor MammoBlock
PLflexBBa_J176040 Version 1 (Component)PLflex
BBa_K115002BBa_K115002 Version 1 (Component)RNA thermometer (FourU)
BBa_K779103BBa_K779103 Version 1 (Component)Input Mimic 1 - mRNA domain 1 DNA sensor MammoBlock
BBa_K779115BBa_K779115 Version 1 (Component)Input Mimic 4 - mRNA domain 4 DNA sensor MammoBlock
BBa_K779111BBa_K779111 Version 1 (Component)Input Mimic 3 - mRNA domain 3 DNA sensor MammoBlock
BBa_K779106BBa_K779106 Version 1 (Component)Output 2 - mRNA domain 2 DNA sensor MammoBlock
BBa_K779104BBa_K779104 Version 1 (Component)Fuel 2 - mRNA domain 2 DNA sensor MammoBlock
BBa_K779105BBa_K779105 Version 1 (Component)Gate 2 - mRNA domain 2 DNA sensor MammoBlock
BBa_K115001BBa_K115001 Version 1 (Component)RNA thermometer (ROSE)
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
BBa_I2032BBa_I2032 Version 1 (Component)T7 RNA polymerase
//dnadna Version 1 (Collection) BBa_K1462503BBa_K1462503 Version 1 (Component)SH3 domain + Linker
BBa_K165006BBa_K165006 Version 1 (Component)Zif268-HIV DNA-binding domain
lexA DBDBBa_K165009 Version 1 (Component)LexA DNA-binding domain
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K300002BBa_K300002 Version 1 (Component)Phasin (PhaP) - head domain
BBa_K779102BBa_K779102 Version 1 (Component)Output 1 - mRNA domain 1 DNA sensor MammoBlock
BBa_K779100BBa_K779100 Version 1 (Component)Fuel 1 - mRNA domain 1 DNA sensor MammoBlock
BBa_K779113BBa_K779113 Version 1 (Component)Gate 4 - mRNA domain 4 DNA sensor MammoBlock
BBa_K779112BBa_K779112 Version 1 (Component)Fuel 4 - mRNA domain 4 DNA sensor MammoBlock
BBa_K779108BBa_K779108 Version 1 (Component)Fuel 3 - mRNA domain 3 DNA sensor MammoBlock
BBa_K779110BBa_K779110 Version 1 (Component)Output 3 - mRNA domain 3 DNA sensor MammoBlock
BBa_K779109BBa_K779109 Version 1 (Component)Gate 3 - mRNA domain 3 DNA sensor MammoBlock
BBa_K779101BBa_K779101 Version 1 (Component)Gate 1 - mRNA domain 1 DNA sensor MammoBlock
BBa_K779114BBa_K779114 Version 1 (Component)Output 4 - mRNA domain 4 DNA sensor MammoBlock
BBa_K165007BBa_K165007 Version 1 (Component)Gli-1 DNA-binding domain
Fok_aBBa_K243000 Version 1 (Component)Protein domain (active) of the restriction endonuclease FokI
BBa_K779503BBa_K779503 Version 1 (Component)Long input strand MammoBlock
RFC105 CCBBa_K1362419 Version 1 (Component)C-terminal splicing overhang CAAC=1/3?+Asn RFC[105] standard overhang CC
BBa_K115003BBa_K115003 Version 1 (Component)RNA thermometer (PrfA)
BBa_K1499202BBa_K1499202 Version 1 (Component)Deinococcus radiodurans uracil-DNA glycosylase 2