Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K1995011BBa_K1995011 Version 1 (Component)IH (INP-N-GFP-H)
NpuDnaE(N)BBa_K1362400 Version 1 (Component)NpuDnaE N-Intein cloning piece
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag
BBa_K209019BBa_K209019 Version 1 (Component)Aar1 A-B part, PLCdelta-PH (Dictyostelium discoideum)
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
BBa_K209098BBa_K209098 Version 1 (Component)GRP1-PH-linker-PI3k1(-N)
"H"BBa_K1080001 Version 1 (Component)ChlH
BBa_K1423000BBa_K1423000 Version 1 (Component)BCLA N-terminal Domain
Ph-sBBa_K143015 Version 1 (Component)Promoter hyper-spank for B. subtilis
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
CBDcipABBa_K1615111 Version 1 (Component)CBDcipA with N and C-terminal linker in RFC25
BBa_I759001BBa_I759001 Version 1 (Component)pTet-spacer-N
IFPBBa_K256008 Version 1 (Component)Infrared Protein (IFP 1.4)
BBa_K1231000BBa_K1231000 Version 1 (Component)The asr promoter is a pH-responsive promoter.
InteinBBa_K300004 Version 1 (Component)Engineered pH-inducible intein (codon optimized for E. coli) - internal domain
1NpuE(N*)BBa_K1362102 Version 1 (Component)RBS + NpuDnaE N-intein RFC[105] non-splicing control construct (with His6)
BBa_K209041BBa_K209041 Version 1 (Component)PLC-PH-linker-PTEN w/o N
RFC105 NNBBa_K1362415 Version 1 (Component)N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN
R0011-NBBa_K1725080 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid) with extra Nhe I site
NPDC-1C3-HBBa_K590028 Version 1 (Component)NPDC-PSB1C3-High constitutive
BBa_K209071BBa_K209071 Version 1 (Component)Aar1 A-B part, PH-Akt
N-carrierBBa_K1362053 Version 1 (Component)Carrier for RFC[105] N-terminal inserts
BBa_K315007BBa_K315007 Version 1 (Component)Lox N forward
lacZ aBBa_E0033 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
TerDnaE3(NBBa_K1362130 Version 1 (Component)RBS + TerDnaE3 N-intein RFC[105] assembly construct (with His6)
SspDnaB(N*BBa_K1362142 Version 1 (Component)RBS + SspDnaB N-intein RFC[105] non-splicing control construct (with His6)
SspDnaB(N)BBa_K1362140 Version 1 (Component)RBS + SspDnaB N-intein RFC[105] assembly construct (with His6)
SspDnaX(N)BBa_K1362110 Version 1 (Component)RBS + SspDnaX N-intein RFC[105] assembly construct (with His6)
SspGyrB(N)BBa_K1362120 Version 1 (Component)RBS + SspGyrB N-intein RFC[105] assembly construct (with His6)
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
NAGABBa_K1483000 Version 1 (Component)α-N-Acetylgalactosamindase
BBa_K801072BBa_K801072 Version 1 (Component)3,7-dimethylxanthine N-methyltransferase CaDXMT1-strep
BBa_K801071BBa_K801071 Version 1 (Component)7-methylxanthine N-methyltransferase CaMXMT1-strep
BBa_K331001BBa_K331001 Version 1 (Component)ECFP with N-terminal Arginine Tag
His6BBa_K1362431 Version 1 (Component)N-terminal His6 (C-Intein)
BBa_K1995002BBa_K1995002 Version 1 (Component)PHG (INP-N-HG)
BBa_K1995016BBa_K1995016 Version 1 (Component)IR (INP-N-merR)
BBa_K1995014BBa_K1995014 Version 1 (Component)IA (INP-N-merA)