Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_F2620
BBa_F2620 Version 1 (Component)
3OC₆HSL -> PoPS Receiver

BBa_P0440
BBa_P0440 Version 1 (Component)
PoPS -> TetR [S0151]

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_P0412
BBa_P0412 Version 1 (Component)
PoPS -> LacI [S0150]

BBa_J13002
BBa_J13002 Version 1 (Component)
TetR repressed POPS/RIPS generator

BBa_K081014
BBa_K081014 Version 1 (Component)
RFP protein generator - PoPS->RFP

pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

BBa_P0451
BBa_P0451 Version 1 (Component)
PoPS -> cI (lambda) [S0153]

BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

BBa_K176063
BBa_K176063 Version 1 (Component)
PoPS->RBS(weak)+lacZalpha-ccdB+T

BBa_K176062
BBa_K176062 Version 1 (Component)
PoPS->RBS(weak)+ccdB+T

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

BBa_K176028
BBa_K176028 Version 1 (Component)
TetR repressible AHL->PoPS Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->PoPS

pLux/Tet
BBa_K176000 Version 1 (Component)
pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS

BBa_P0140
BBa_P0140 Version 1 (Component)
PoPS -> TetR [S0163]

BBa_P0151
BBa_P0151 Version 1 (Component)
PoPS -> cI (lambda) [S0165]

BBa_K081012
BBa_K081012 Version 1 (Component)
GFP protein generator - PoPS->GFP

BBa_K176191
BBa_K176191 Version 1 (Component)
PoPS->RBS(weak)+AID->PoPS

BBa_P0152
BBa_P0152 Version 1 (Component)
PoPS -> cI (434) [S0166]

BBa_K176165
BBa_K176165 Version 1 (Component)
PoPS->RBS(weak)+ccdB-LVA+T

T7 RBS
BBa_K1362090 Version 1 (Component)
strong T7 RBS

RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

BBa_P0153
BBa_P0153 Version 1 (Component)
PoPS -> cII (p22) [S0167]

BBa_K081016
BBa_K081016 Version 1 (Component)
lasI protein generator - PoPS->lasI

BBa_K176166
BBa_K176166 Version 1 (Component)
PoPS->RBS(weak)+lacZalpha-ccdB-LVA+T

BBa_P0312
BBa_P0312 Version 1 (Component)
PoPS -> LacI [S0156]

BBa_P0340
BBa_P0340 Version 1 (Component)
PoPS -> TetR [S0157]

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

BBa_I14044
BBa_I14044 Version 1 (Component)
weak RBS . LacI

BBa_J24675
BBa_J24675 Version 1 (Component)
PoPS-> lacI and mCherry

BBa_K176106
BBa_K176106 Version 1 (Component)
PoPS->RBS+GFP->RBS+luxI-LVA->PoPS

BBa_I732086
BBa_I732086 Version 1 (Component)
[aTc] -> PoPS (version1)

BBa_K274370
BBa_K274370 Version 1 (Component)
PoPS -> P2 ogr - PF promoter -> PoPS

BBa_K608007
BBa_K608007 Version 1 (Component)
medium Promoter , weak RBS

BBa_K427005
BBa_K427005 Version 1 (Component)
MuC sensitivity tuner (PoPS->PoPS)

BBa_K300009
BBa_K300009 Version 1 (Component)
PoPS->3OC6HSL sender device

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)