GFPGFP Version 1 (Unknown)Organism: Cryptococcus neoformans serotype A H99S
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
BBa_F2620BBa_F2620 Version 1 (Component)3OC<sub>6</sub>HSL -> PoPS Receiver
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_K823003BBa_K823003 Version 1 (Component)P<sub>veg</sub>
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
BBa_F1610BBa_F1610 Version 1 (Component)3OC<sub>6</sub>HSL Sender Device
BBa_F2622BBa_F2622 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
BBa_F2621BBa_F2621 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
BBa_K823002BBa_K823002 Version 1 (Component)P<sub>lepA</sub>
BBa_S03686BBa_S03686 Version 1 (Component)RFP<sub>rev</sub>RBS<sub>rev</sub>-HixC : pLac<sub>rev</sub>-HixC (dummy part)
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_S03532BBa_S03532 Version 1 (Component)TetB-RBS<sub>rev</sub>
BBa_S03533BBa_S03533 Version 1 (Component)pBad-HixC-TetB-RBS<sub>rev</sub>
YFPBBa_E0032 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
BBa_S03637BBa_S03637 Version 1 (Component)HixC : pBad<sub>rev</sub>-HixC
BBa_S03683BBa_S03683 Version 1 (Component)RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC : pLac-HixC
BBa_S03636BBa_S03636 Version 1 (Component)TetB-RBS<sub>rev</sub> : HixC
BBa_S03684BBa_S03684 Version 1 (Component)(1,2) RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC-pLac-HixC : RBS-TetF-HixC
BBa_S03681BBa_S03681 Version 1 (Component)(-2,-1) RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC-TB-RBS<sub>rev</sub>-HixC : pLac<sub>rev</sub>-HixC
BBa_S03688BBa_S03688 Version 1 (Component)(-1,-2) RFP<sub>rev</sub>RBS<sub>rev</sub>-HixC-pLac<sub>rev</sub>-HixC : TB-RBS<sub>rev</sub>-HixC
BBa_S03676BBa_S03676 Version 1 (Component)RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC : TetB-RBS<sub>rev</sub>-HixC
BBa_S03680BBa_S03680 Version 1 (Component)(-2,1) RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC-TB-RBS<sub>rev</sub>-HixC : pLac-HixC
BBa_S03624BBa_S03624 Version 1 (Component)pBad-HixC-TetB-RBS<sub>rev</sub> : HixC
BBa_S03648BBa_S03648 Version 1 (Component)RFP<sub>rev</sub>-RBS<sub>rev</sub> : HixC
BBa_S03687BBa_S03687 Version 1 (Component)(-1,2) RFP<sub>rev</sub>RBS<sub>rev</sub>-HixC-pLac<sub>rev</sub>-HixC : RBS-TetF-HixC
BBa_K823000BBa_K823000 Version 1 (Component)P<sub>liaG</sub>
BBa_S03685BBa_S03685 Version 1 (Component)(1,-2) RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC-pLac-HixC : TetB-RBS<sub>rev</sub>-HixC
BBa_S03679BBa_S03679 Version 1 (Component)(2,-1) RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC-RBS-TetF-HixC : pLac<sub>rev</sub>-HixC
BBa_S03673BBa_S03673 Version 1 (Component)(1)-2 RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC : pLac-HixC-TetB-RBS<sub>rev</sub>
BBa_S03678BBa_S03678 Version 1 (Component)pLac<sub>rev</sub> : HixC
BBa_S03675BBa_S03675 Version 1 (Component)RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC : RBS-TetF-HixC
BBa_S03639BBa_S03639 Version 1 (Component)(-1,-2) HixC-pBad<sub>rev</sub>-HixC : TetB-RBS<sub>rev</sub>-HixC
BBa_S03677BBa_S03677 Version 1 (Component)(2,1) RFP<sub>rev</sub>-RBS<sub>rev</sub>-HixC-RBS-TetF-HixC : pLac-HixC
BBa_I13202BBa_I13202 Version 1 (Component)3OC<sub>6</sub>HSL Sender Controlled by Lac Repressible Promoter