Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

scar
BBa_J176041 Version 1 (Component)
Silver scar

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

BBa_J23100
BBa_J23100 Version 1 (Component)
constitutive promoter family member

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

BBa_J23119
BBa_J23119 Version 1 (Component)
constitutive promoter family member

BBa_J23101
BBa_J23101 Version 1 (Component)
constitutive promoter family member

BBa_J23106
BBa_J23106 Version 1 (Component)
constitutive promoter family member

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_J61101
BBa_J61101 Version 1 (Component)
Ribosome Binding Site Family Member

mCh
BBa_J176005 Version 1 (Component)
mCh

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

BBa_J23110
BBa_J23110 Version 1 (Component)
constitutive promoter family member

BBa_J61120
BBa_J61120 Version 1 (Component)
Ribosome Binding Site Family Member

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

VR11
BBa_K176055 Version 1 (Component)
Reverse primer VR11 (bind to K176045), member of VR3~VR12

BBa_J23114
BBa_J23114 Version 1 (Component)
constitutive promoter family member

VR10
BBa_K176054 Version 1 (Component)
Reverse primer VR10 (bind to K176044), member of VR3~VR12

BBa_J23102
BBa_J23102 Version 1 (Component)
constitutive promoter family member

BBa_J23116
BBa_J23116 Version 1 (Component)
constitutive promoter family member

BBa_J61100
BBa_J61100 Version 1 (Component)
Ribosome Binding Site Family Member

VR12
BBa_K176056 Version 1 (Component)
Reverse primer VR12 (bind to K176046), member of VR3~VR12

VR8
BBa_K176052 Version 1 (Component)
Reverse primer VR8 (bind to K176042), member of VR3~VR12

VR7
BBa_K176051 Version 1 (Component)
Reverse primer VR7 (bind to K176041), member of VR3~VR12

VR9
BBa_K176053 Version 1 (Component)
Reverse primer VR9 (bind to K176043), member of VR3~VR12

VR6
BBa_K176050 Version 1 (Component)
Reverse primer VR6 (bind to K176040), member of VR3~VR12

BBa_B0025
BBa_B0025 Version 1 (Component)
double terminator (B0015), reversed

VR4
BBa_K176048 Version 1 (Component)
Reverse primer VR4 (bind to K176038), member of VR3~VR12

VR5
BBa_K176049 Version 1 (Component)
Reverse primer VR5 (bind to K176039), member of VR3~VR12

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_J23104
BBa_J23104 Version 1 (Component)
constitutive promoter family member

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

VR3
BBa_K176047 Version 1 (Component)
Reverse primer VR3 (bind to K176037), member of VR3~VR12

BBa_J23109
BBa_J23109 Version 1 (Component)
constitutive promoter family member

BBa_J23118
BBa_J23118 Version 1 (Component)
constitutive promoter family member