Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_B1001
BBa_B1001 Version 1 (Component)
Terminator (artifical, small, %T~=90)

BBa_B1006
BBa_B1006 Version 1 (Component)
Terminator (artificial, large, %T~>90)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_B1002
BBa_B1002 Version 1 (Component)
Terminator (artificial, small, %T~=85%)

T
BBa_G0012 Version 1 (Component)
The nucleotide T

AA
BBa_K1362465 Version 1 (Component)
Double A (2x the nucleotide Adenine)

DspBx
BBa_K1659210 Version 1 (Component)
Dispersin B with mutation at nucleotide 582 (T to C)

BBa_K176006
BBa_K176006 Version 1 (Component)
PoPS->RBS+tetR-LVA+T

DsbDspBx
BBa_K1659211 Version 1 (Component)
Dispersin B fused with DsbA, with mutation at nucleotide 636 (T to C)

BBa_K176063
BBa_K176063 Version 1 (Component)
PoPS->RBS(weak)+lacZalpha-ccdB+T

BBa_K176062
BBa_K176062 Version 1 (Component)
PoPS->RBS(weak)+ccdB+T

BBa_B1005
BBa_B1005 Version 1 (Component)
Terminator (artificial, small, %T~=25%

RFC105 A
BBa_K1362414 Version 1 (Component)
N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A

BBa_K116640
BBa_K116640 Version 1 (Component)
pTet + RBS + LuxR + T

BBa_B1010
BBa_B1010 Version 1 (Component)
Terninator (artificial, large, %T~<10)

G
BBa_G0011 Version 1 (Component)
The nucleotide G

A
BBa_G0009 Version 1 (Component)
The nucleotide A

C
BBa_G0010 Version 1 (Component)
The nucleotide C

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_B1007
BBa_B1007 Version 1 (Component)
Terminator (artificial, large, %T~=80)

BBa_B1003
BBa_B1003 Version 1 (Component)
Terminator (artificial, small, %T~=80)

LacI-T
BBa_K143062 Version 1 (Component)
LacI repressor protein - Terminator

CmR-T
BBa_K143064 Version 1 (Component)
Chloramphenicol resistance protein - Terminator

BBa_K741006
BBa_K741006 Version 1 (Component)
RBS-crogfp-T

spacer
BBa_K1463030 Version 1 (Component)
Switch Nucleotide Spacer

BBa_B1009
BBa_B1009 Version 1 (Component)
Terminator (artificial, large, %T~=40%)

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

BBa_K741002
BBa_K741002 Version 1 (Component)
plac-RBS-GFP-T

T
BBa_K2088666 Version 1 (Component)
MhbT is responsible for the uptake of 3-hydroxybenzoate

BBa_K914011
BBa_K914011 Version 1 (Component)
supD-T - intermediate

BBa_B1008
BBa_B1008 Version 1 (Component)
Terminator (artificial, large, %T~=70)

BBa_S05152
BBa_S05152 Version 1 (Component)
mOrangeFP+T

EFE + T
BBa_K1065002 Version 1 (Component)
EFE + Terminators