Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

THI3
BBa_J45009 Version 1 (Component)
ketoisocaproate decarboxylase (THI3); converts alpha-ketoisocaproate to 3-methylbutanal

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

BAT2
BBa_J45008 Version 1 (Component)
branched-chain amino acid transaminase (BAT2); converts leucine to alpha-ketoisocaproate

lacZ-alpha
BBa_I732006 Version 1 (Component)
lacZ alpha fragment

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K2066019
BBa_K2066019 Version 1 (Component)
UNS 3 Sequence, from Torella et al., 2013

BBa_K1510087
BBa_K1510087 Version 1 (Component)
Fragrance generator part1: ketoisocaproate decarboxylase (THI3)

BBa_K1510915
BBa_K1510915 Version 1 (Component)
ketoisocaproate decarboxylase (THI3) Circuit

BBa_P10599
BBa_P10599 Version 1 (Component)
GoldenBraid destination vector alpha insert

BBa_K1510922
BBa_K1510922 Version 1 (Component)
Fragrance generator part1: ketoisocaproate decarboxylase (THI3) and RBS

BBa_K539714
BBa_K539714 Version 1 (Component)
kivd (alpha-ketoisovalerate decarboxylase)

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

ATF1
BBa_J45014 Version 1 (Component)
alcohol acetyltransferase I; converts isoamyl alcohol to isoamyl acetate (banana odor)

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

BBa_K325210
BBa_K325210 Version 1 (Component)
Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K539731
BBa_K539731 Version 1 (Component)
kivd (alpha-ketoisovalerate decarboxylase) under TetR repressible promoter

3-MBG
BBa_J45400 Version 1 (Component)
3-methylbutanal generator

BBa_I732092
BBa_I732092 Version 1 (Component)
Double Repoters (LacZ-alpha and RFP)

ADC
BBa_K590031 Version 1 (Component)
Aldehyde Decarbonylase (ADC) - Synechococcus elongatus PCC7942

BBa_K539742
BBa_K539742 Version 1 (Component)
TetR repressible promoter (BBa_R0040)+ kivd (alpha-ketoisovalerate decarboxylase)+Ter (BBa_B0015)

BSMT1
BBa_J45004 Version 1 (Component)
SAM:benzoic acid/salicylic acid carboxyl methyltransferase I; converts salicylic acid to methyl sali

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase

BBa_K325100
BBa_K325100 Version 1 (Component)
EPIC Firefly Luciferase and LRE <BR><i>P. Pyralis<BR>(E. coli optimised)</i>

pchBA
BBa_J45017 Version 1 (Component)
isochorismate pyruvate-lyase and isochorismate synthase (pchBA); converts chorismate to salicylate

BBa_K1674003
BBa_K1674003 Version 1 (Component)
tsPurple Reporter + 3-alpha-HSD (RBS + Coding + Terminator)

cI 434
BBa_R1052 Version 1 (Component)
Promoter, Standard (434 cI regulated)<br>

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1150041
BBa_K1150041 Version 1 (Component)
uniCAS RNaimer to Bla Target 3

BBa_K325903
BBa_K325903 Version 1 (Component)
luxEG <BR><i>V. Fischeri<BR>(E. coli optimised)</i>

cI HK022
BBa_R1050 Version 1 (Component)
Promoter, Standard (HK022 cI regulated) <br>

BBa_K395603
BBa_K395603 Version 1 (Component)
alcohol acetyltransferase; converts butanol or 2-methylbutanol to butyl acetate or 2-methylbutyl ace

EFE
BBa_K1065000 Version 1 (Component)
<html>2-oxoglutarate oxygenase/decarboxylase (EFE)</html>