SynBioHub

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

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2/3Gly
BBa_K1362467 Version 1 (Component)
other 2/3Gly

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BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

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2/3Gly
BBa_K1362464 Version 1 (Component)
2/3Gly

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ShortLinke
BBa_K243004 Version 1 (Component)
Short Linker (Gly-Gly-Ser-Gly)

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RFC105 CN
BBa_K1362418 Version 1 (Component)
N-terminal GG-linker overhang <u>GGTG</u>=Gly+1/3Gly RFC[105] overhang CN

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LongLinker
BBa_K243006 Version 1 (Component)
Long Linker (Gly-Gly-Ser-Gly)x3

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MiddleLink
BBa_K243005 Version 1 (Component)
Middle Linker ( Gly-Gly-Ser-Gly)x2

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SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

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BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

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RFC105 NC
BBa_K1362417 Version 1 (Component)
C-terminal GG-linker overhang GG<u>TGGT</u>=Gly+Gly RFC[105] overhang NC

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BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

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BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

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BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

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BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

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BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

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BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member

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BBa_K1763439
BBa_K1763439 Version 1 (Component)
MaSp1/2[2:1]-12(T7)

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BBa_K1763443
BBa_K1763443 Version 1 (Component)
MaSp1/2[1:2]-12(T7)

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//classic/other
classic_other Version 1 (Collection)

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BBa_K1486007
BBa_K1486007 Version 1 (Component)
IFP[2]

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Lin-2
BO_9115 Version 1 (Component)

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"Eye 2"
BBa_K1080011 Version 1 (Component)
ChlI2

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BBa_K1799000
BBa_K1799000 Version 1 (Component)
pLsrA-2

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//plasmid/component/other
plasmid_component_other Version 1 (Collection)

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BBa_K500001
BBa_K500001 Version 1 (Component)
lignin degradation 2

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Lock 2
BBa_J01011 Version 1 (Component)
Riboregulator Lock 2

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Key 2
BBa_J01009 Version 1 (Component)
Riboregulator Key 2

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BBa_K1399007
BBa_K1399007 Version 1 (Component)
GFP (mut3b) with SsrA-DAS+2 degradation tag

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//chassis/eukaryote/plants/other
chassis_eukaryote_plants_other Version 1 (Collection)

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//classic/other/uncategorized
classic_other_uncategorized Version 1 (Collection)

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BBa_K203111
BBa_K203111 Version 1 (Component)
Constitutive promoter; 2 REU

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//classic/regulatory/other
classic_regulatory_other Version 1 (Collection)

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BBa_K1763440
BBa_K1763440 Version 1 (Component)
MaSp1/2[1:1]-12(1C3)

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BBa_I13513
BBa_I13513 Version 1 (Component)
Screening Plasmid 2

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BBa_K1150040
BBa_K1150040 Version 1 (Component)
uniCAS RNAimer to Bla Target 2

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EFE
BBa_K1065000 Version 1 (Component)
<html>2-oxoglutarate oxygenase/decarboxylase (EFE)</html>

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Gly+1/3Leu
BBa_K1362478 Version 1 (Component)
Gly+1/3Leu

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BBa_K1797016
BBa_K1797016 Version 1 (Component)
dCas9-Long Linker (Gly-Gly-Ser-Gly)x3-Flp

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BBa_M39901
BBa_M39901 Version 1 (Component)
blah 2

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BBa_I766336
BBa_I766336 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser ING2 PH Domain

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BBa_K1351029
BBa_K1351029 Version 1 (Component)
LMU Bacillus RBS collection 2

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BBa_K1499202
BBa_K1499202 Version 1 (Component)
Deinococcus radiodurans uracil-DNA glycosylase 2

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BBa_K1486017
BBa_K1486017 Version 1 (Component)
fLuc[2]

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BBa_M1592
BBa_M1592 Version 1 (Component)
other gene

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BBa_I766234
BBa_I766234 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser-Ent5p-ENTH PH Domain

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BBa_I766231
BBa_I766231 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser FYVE-EEA1 PH Domain

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