Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

rhII
BBa_C0070 Version 1 (Component)
autoinducer synthetase for N-butyryl-HSL (BHL) and HHL

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

luxI
BBa_C0161 Version 1 (Component)
autoinducer synthetase for AHL (no LVA)

BBa_J37019
BBa_J37019 Version 1 (Component)
AHL induced LuxR generator

BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

BBa_K379000
BBa_K379000 Version 1 (Component)
AHL induced concentration Band detect

BBa_K379002
BBa_K379002 Version 1 (Component)
AHL induced concentration Band detect

BBa_K379001
BBa_K379001 Version 1 (Component)
AHL induced concentration Band detect

pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

BBa_K2066019
BBa_K2066019 Version 1 (Component)
UNS 3 Sequence, from Torella et al., 2013

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

RhI
BBa_I14017 Version 1 (Component)
P(Rhl)

BBa_K1799019
BBa_K1799019 Version 1 (Component)
AHL-induced LacZ Generator

rhII
BBa_C0170 Version 1 (Component)
autoinducer synthetase for N-butyryl-HSL (BHL) and HHL (no LVA)

BBa_K249001
BBa_K249001 Version 1 (Component)
Arabinose Induced Inverter

BBa_K176028
BBa_K176028 Version 1 (Component)
TetR repressible AHL->PoPS Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->PoPS

BBa_K737026
BBa_K737026 Version 1 (Component)
Promoter that can be induced by phosphate and carbon starvation.

BBa_K233313
BBa_K233313 Version 1 (Component)
ahl induced ahl producer

BBa_I13554
BBa_I13554 Version 1 (Component)
AHL-induced GFP

BBa_I13556
BBa_I13556 Version 1 (Component)
AHL-induced mCherry

BBa_I13555
BBa_I13555 Version 1 (Component)
AHL-induced GFP

BBa_K137114
BBa_K137114 Version 1 (Component)
AHL induced production of RcsA

BBa_J58121
BBa_J58121 Version 1 (Component)
Detector of OmpR-P concentrations

BBa_K332033
BBa_K332033 Version 1 (Component)
37℃ induced RBS + tetR + double terminator

BBa_I13549
BBa_I13549 Version 1 (Component)
AHL-induced RFP reporter

BBa_I13559
BBa_I13559 Version 1 (Component)
AHL-induced ECFP reporter

BBa_K1799018
BBa_K1799018 Version 1 (Component)
AHL-Induced RFP Generator

BBa_I13560
BBa_I13560 Version 1 (Component)
AHL-induced ECFP reporter

BBa_I13557
BBa_I13557 Version 1 (Component)
AHL-induced mCherry reporter

BBa_I13550
BBa_I13550 Version 1 (Component)
AHL-induced RFP reporter

BBa_K737023
BBa_K737023 Version 1 (Component)
Promoter that can be induced by phosphate.

BBa_J33207
BBa_J33207 Version 1 (Component)
lac promoter and lacZ

BBa_K1165010
BBa_K1165010 Version 1 (Component)
CepR AHL-induced Regulatory Protein

BBa_I13548
BBa_I13548 Version 1 (Component)
AHL-induced GFP and RFP polycistronic reporter