Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

HerE
BBa_K1615045 Version 1 (Component)
Heroin Esterase in RFC25

cheZ
BBa_K629003 Version 1 (Component)
cheZ, chemotaxis regulator, protein phosphatase for CheY

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

BBa_K1898100
BBa_K1898100 Version 1 (Component)
ch25h, cholesterol 25 hydroxylase

ColOx
BBa_K1313000 Version 1 (Component)
Cholesterol Oxidase

BBa_K1499502
BBa_K1499502 Version 1 (Component)
Cellulose Acetate Esterase (Cae)

cheB
BBa_C0024 Version 1 (Component)
CheB chemotaxis coding sequence (protein glutamate methylesterase)

BBa_K2187003
BBa_K2187003 Version 1 (Component)
Chlorogenate Esterase gene

BBa_K892012
BBa_K892012 Version 1 (Component)
PUR-Esterase

cheY
BBa_C0020 Version 1 (Component)
CheY "tumbling" chemotaxis coding sequence

BBa_K2187001
BBa_K2187001 Version 1 (Component)
Chlorogenate Esterase gene

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1159000
BBa_K1159000 Version 1 (Component)
Erythromycin Esterase Type II (EreB) in RFC[25]

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_K1898001
BBa_K1898001 Version 1 (Component)
CH25H (cholesterol sdjfladsfjadsf) human modified no stop ocdow

BBa_K1615053
BBa_K1615053 Version 1 (Component)
CBDclos fused to Heroin Esterase in RFC25

BBa_K1615051
BBa_K1615051 Version 1 (Component)
CBDcex fused to Heroin Esterase in RFC25

CWE
BBa_K1362433 Version 1 (Component)
CWE (extein)

BBa_K1216002
BBa_K1216002 Version 1 (Component)
Acetyl esterase (aes) from Escherichia Coli

BBa_K1622001
BBa_K1622001 Version 1 (Component)
Coupled Esterase and Terephthalic acid transporter

BBa_K1615046
BBa_K1615046 Version 1 (Component)
Heroin Esterase driven by LacI promoter

BBa_K1615049
BBa_K1615049 Version 1 (Component)
Heroin Esterase fused to CBDcenA+Linker in RFC25

BBa_K1615048
BBa_K1615048 Version 1 (Component)
Heroin Esterase fused to CBDcenA+Linker in RFC25

BBa_K1615047
BBa_K1615047 Version 1 (Component)
CBDcenA+Linker fused to heroin esterase in RFC25

BBa_K808026
BBa_K808026 Version 1 (Component)
pNB-Est 13: Esterase PET cleaving enzyme

cher
BBa_C0028 Version 1 (Component)
CheR chemotaxis coding region

BBa_K1615055
BBa_K1615055 Version 1 (Component)
Linker-CBDcipA-linker fused to Heroin Esterase in RFC25

BBa_K1615056
BBa_K1615056 Version 1 (Component)
Heroin Esterase fused to Linker-CBDcipA-linker in RFC25

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

cre
BBa_K112102 Version 1 (Component)
Cre enzyme without start or stop codons

BBa_K1615063
BBa_K1615063 Version 1 (Component)
CBDclos fused to Heroin Esterase driven by LacI promoter

BBa_K1615061
BBa_K1615061 Version 1 (Component)
CBDcex fused to Heroin Esterase driven by LacI promoter