ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K112323BBa_K112323 Version 1 (Component){H-NS!} in BBb format
BBa_K543002BBa_K543002 Version 1 (Component)HNS mutant T108I
BBa_K112321BBa_K112321 Version 1 (Component){H-NS!} using MG1655 reverse oligo in BBb format
"H"BBa_K1080001 Version 1 (Component)ChlH
NPDC-1C3-HBBa_K590028 Version 1 (Component)NPDC-PSB1C3-High constitutive
BBa_K543003BBa_K543003 Version 1 (Component)HNS mutant T108I protein generator
BBa_K1418022BBa_K1418022 Version 1 (Component)p-amylase(ns)HTB0015
BBa_K912033BBa_K912033 Version 1 (Component)pH Inducible Lysis System(ns)
BBa_K912034BBa_K912034 Version 1 (Component)pH Inducible GFP system (ns)
BBa_K137003BBa_K137003 Version 1 (Component)LacY +H Insertion Mutation
BBa_K2055001BBa_K2055001 Version 1 (Component)Na(+)/H(+) antiporter NhaA
BBa_K2128008BBa_K2128008 Version 1 (Component)H. dujardini ACTN promoter w/ 5' UTR
BBa_K2128009BBa_K2128009 Version 1 (Component)H. Dujardini ACTN Termanator w/ 3' UTR
sfGFP(C)-HBBa_K1362472 Version 1 (Component)split sfGFPc half
BBa_K1196013BBa_K1196013 Version 1 (Component)NADH:ubiquinone reductase (H+-translocating)
BBa_K305004BBa_K305004 Version 1 (Component)Hydrophobic protein chaplin H (chpH)
BBa_K1524100BBa_K1524100 Version 1 (Component)H-stem expression vector
BBa_K189015BBa_K189015 Version 1 (Component)H of lambda genome
BBa_I10043BBa_I10043 Version 1 (Component)H. sapiens FAS Receptor
BBa_K1995008BBa_K1995008 Version 1 (Component)BH (H coding sequence)
BBa_K1844003BBa_K1844003 Version 1 (Component)Arg-H KO Construct
BBa_K565002BBa_K565002 Version 1 (Component)Colicin H gene cluster
BBa_K917006BBa_K917006 Version 1 (Component)E. coli cytochrome maturation gene cluster ccmA-H