SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette

tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

BBa_K1773003
BBa_K1773003 Version 1 (Component)
I-F type CRISPR-Cas Cas3 gene

tetA(C)f
BBa_J31007 Version 1 (Component)
tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]

BBa_K1773004
BBa_K1773004 Version 1 (Component)
I-F type CRISPR-Cas homogenous CRISPR region

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

BBa_K1773005
BBa_K1773005 Version 1 (Component)
I-F type CRISPR-Cas Cascade complex

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

ecfp
BBa_E0020 Version 1 (Component)
engineered cyan fluorescent protein derived from A. victoria GFP

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1773002
BBa_K1773002 Version 1 (Component)
I-F type CRISPR-Cas Cas3 protein

BBa_K1773000
BBa_K1773000 Version 1 (Component)
I-F type CRISPR-Cas Cascade complex

BBa_K1445001
BBa_K1445001 Version 1 (Component)
Endogenous Type II CRISPR-Cas9 phagemid

BBa_K1773001
BBa_K1773001 Version 1 (Component)
I-F type CRISPR-Cas Cascade complex

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

Cat
BBa_I14033 Version 1 (Component)
P(Cat)

BBa_K1559002
BBa_K1559002 Version 1 (Component)
rearranged CRISPR/Cas9 system without promoter

Cse1
BBa_K1218003 Version 1 (Component)
CRISPR CasA E. coli (Modern)

OriTF
BBa_J01002 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

lacZ-alpha
BBa_I732006 Version 1 (Component)
lacZ alpha fragment

ccdB
BBa_K145151 Version 1 (Component)
ccdB coding region

BBa_I714030
BBa_I714030 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

cI 434
BBa_C0052 Version 1 (Component)
cI repressor from phage 434 (+LVA)

Cse1
BBa_K1218004 Version 1 (Component)
CRISPR CasA (Ancestral)

BBa_E0044
BBa_E0044 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212)

BBa_K1160000
BBa_K1160000 Version 1 (Component)
coding sequence of Cas9 from CRISPR system type II

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

Las CIO
BBa_I14016 Version 1 (Component)
P(Las) CIO

CII
BBa_K116602 Version 1 (Component)
CII coding region from λ phage

BBa_K578001
BBa_K578001 Version 1 (Component)
E. coli CRISPR I leader sequence