Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
pUVBBa_I765001 Version 1 (Component)UV promoter
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
PuBBa_I723020 Version 1 (Component)Pu
BBa_I746360BBa_I746360 Version 1 (Component)PF promoter from P2 phage
PIF-6BBa_K365001 Version 1 (Component)Phytochrome Interacting Factor 6 (aa 1-100)
PIF-3BBa_K365000 Version 1 (Component)Phytochrome Interacting Factor-3 (aa 1-100)
pcfBO_31545 Version 1 (Component) YpuFBO_2317 Version 1 (Component) purFBO_28579 Version 1 (Component) ypuFBO_31340 Version 1 (Component) PurFBO_26992 Version 1 (Component) PucFBO_26727 Version 1 (Component) BBa_K1935006BBa_K1935006 Version 1 (Component)pU6 regulatory sequences of C.elegans
BBa_K227007BBa_K227007 Version 1 (Component)puc promoter
Hin LVABBa_J31001 Version 1 (Component)DNA invertase Hin tagged with LVA
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_J23046BBa_J23046 Version 1 (Component)put in later - SIL strain
BBa_I746320BBa_I746320 Version 1 (Component)GFP under control of PF promoter
phlFBBa_K1725040 Version 1 (Component)<i>phlF</i> encoding PhlF repressor from Pseudomonas protegens Pf-5
Lin-2BO_9115 Version 1 (Component) REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
BBa_K892012BBa_K892012 Version 1 (Component)PUR-Esterase
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_J61148BBa_J61148 Version 1 (Component)pBca9145 basic pUC/Amp plasmid in BBb
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K1031803BBa_K1031803 Version 1 (Component)Pu-B0031-sfGFP-Terminator (XylR)
BBa_K1935016BBa_K1935016 Version 1 (Component)White Collar 2 under the control of pU6 promoter in C.elegans (pU6::WC2)
BBa_K1935014BBa_K1935014 Version 1 (Component)White Collar 1 under the control of pU6 promoter in C.elegans (pU6::WC1)
BBa_K274370BBa_K274370 Version 1 (Component)PoPS -> P2 ogr - PF promoter -> PoPS
BBa_I746370BBa_I746370 Version 1 (Component)P2 ogr inducing PF promoter
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K1550007BBa_K1550007 Version 1 (Component)Pfu DNA Polymerase
BBa_J72109BBa_J72109 Version 1 (Component)AmpR pUC vector
PrFeBBa_J3902 Version 1 (Component)PrFe (PI + PII rus operon)
BBa_K1371019BBa_K1371019 Version 1 (Component)Docking domain 2 suf
BBa_K1371027BBa_K1371027 Version 1 (Component)Docking domain 6 suf
BBa_K1371021BBa_K1371021 Version 1 (Component)Docking domain 3 suf
BBa_K1371017BBa_K1371017 Version 1 (Component)Docking domain 1 suf
BBa_K1371023BBa_K1371023 Version 1 (Component)Docking domain 4 suf
BBa_K1371025BBa_K1371025 Version 1 (Component)Docking domain 5 suf