SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette

eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

ComE
BBa_K1379051 Version 1 (Component)
<i>S. pneumoniae</i> ComE CDS

ecfp
BBa_E0020 Version 1 (Component)
engineered cyan fluorescent protein derived from A. victoria GFP

ComX
BBa_K1379004 Version 1 (Component)
<i>S. pneumoniae </i> &#963;^x CDS

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

lacZ-alpha
BBa_I732006 Version 1 (Component)
lacZ alpha fragment

BBa_K531001
BBa_K531001 Version 1 (Component)
<i>C. crescentus</i> S-layer RsaA C-term

tADH1
BBa_J63002 Version 1 (Component)
ADH1 terminator from S. cerevisiae

scar
BBa_G0000 Version 1 (Component)
SpeI/XbaI scar for RBS-CDS junctions

cI 434
BBa_C0052 Version 1 (Component)
cI repressor from phage 434 (+LVA)

BBa_K733010
BBa_K733010 Version 1 (Component)
<i>Ptms</i>+RBS+<i>ydcD</i>.

BBa_K531006
BBa_K531006 Version 1 (Component)
Optimized esp gene for <i>C. crescentus</i>

BBa_K733013
BBa_K733013 Version 1 (Component)
<i>Pveg</i>+R.B.S.

BBa_K733006
BBa_K733006 Version 1 (Component)
<i>ydjM</i>+<i>Bmp2</i>

BBa_K733001
BBa_K733001 Version 1 (Component)
<i>Ptms</i> - a constitutive promoter in <i>E. coli</i> and <i>B. subtilis</i>.

ComX
BBa_K1379006 Version 1 (Component)
<i>S. pneumoniae </i> &#963;^x Generator

BBa_K733012
BBa_K733012 Version 1 (Component)
<i>xylR</i>+<i>PxylA</i>+RBS+<i>ydcE</i>+<i>Ptms</i>+RBS+<i>ydcD</i>: Cell Growth Inhibition Device

BBa_K733014
BBa_K733014 Version 1 (Component)
<i>Pveg</i>+RBS+<i>ydjM</i>+<i>Bmp2</i>

phlF
BBa_K1725040 Version 1 (Component)
<i>phlF</i> encoding PhlF repressor from Pseudomonas protegens Pf-5

BBa_K314111
BBa_K314111 Version 1 (Component)
Lac I

BBa_K2151002
BBa_K2151002 Version 1 (Component)
p32, strong constitutive <i>S. thermophilus</i> promoter

BBa_K2151001
BBa_K2151001 Version 1 (Component)
p25, moderate constitutive <i>S. thermophilus</i> promoter

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

p_qrr4
BBa_K131017 Version 1 (Component)
p_qrr4 from <I>Vibrio harveyi</I>

adh2
BBa_K273005 Version 1 (Component)
Alcohol Dehydrogenase 2 (adh2 , adhII, adhB) from <i>S. cerevisiae</i>

BBa_K733018
BBa_K733018 Version 1 (Component)
<i>xylR</i>+<i>PxylA</i>+RBS+GFP+Double Terminator

BBa_K733002
BBa_K733002 Version 1 (Component)
<i>xylR</i>+<i>PxylA</i>: A xylose inducible promoter with its transcriptional regulator.

amilCP
BBa_K592009 Version 1 (Component)
amilCP, blue chromoprotein

BBa_K2151000
BBa_K2151000 Version 1 (Component)
pHLBA, strong constitutive <i>S. thermophilus</i> promoter

BBa_K1638003
BBa_K1638003 Version 1 (Component)
T25 domain of <i>cyaA</i> from <i>Bordetella pertussis</i> (IPTG inducible)

BBa_K733016
BBa_K733016 Version 1 (Component)
<i>Pveg</i>+RBS+<i>ydjM</i>+<i>Bmp2</i>+terminator

BBa_K733017
BBa_K733017 Version 1 (Component)
<i>Pveg</i>+RBS+<i>ybdN</i>+<i>Bmp2</i>+terminator

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

BBa_K602000
BBa_K602000 Version 1 (Component)
<i>Deinococcus radiodurans</i> PprI

PphoA
BBa_K1139200 Version 1 (Component)
<i>phoA</i> promoter

BBa_K1315001
BBa_K1315001 Version 1 (Component)
The <i>pqsA</i> promoter from <i>Pseudomonas</i>

BBa_K602001
BBa_K602001 Version 1 (Component)
<i>Deinococcus radiodurans</i> PprA