Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
LacIBBa_R0010 Version 1 (Component)promoter (lacI regulated)
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
lacI+pLBBa_R0011 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid)
LacILacI Version 1 (Component) P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
lacZ-alphaBBa_I732006 Version 1 (Component)lacZ alpha fragment
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
cI HK022BBa_C0050 Version 1 (Component)cI repressor from phage HK022 (+LVA?)
BBa_K329057BBa_K329057 Version 1 (Component)[KanR + LacZ] in between MUT_MUT[HK022] Tn916 Arms
BBa_K329062BBa_K329062 Version 1 (Component)[KanR] in between MUT_MUT[HK022] Tn916 Arms
BBa_K329056BBa_K329056 Version 1 (Component)[KanR + LacZ] in between WT_MUT[HK022] Tn916 Arms
BBa_K329061BBa_K329061 Version 1 (Component)[KanR] in between WT_MUT[HK022] Tn916 Arms
BBa_K329055BBa_K329055 Version 1 (Component)[KanR + LacZ] in between MUT_MUT[Lambda] Tn916 Arms
BBa_K329060BBa_K329060 Version 1 (Component)[KanR] in between MUT_MUT[Lambda] Tn916 Arms
BBa_K329054BBa_K329054 Version 1 (Component)[KanR + LacZ] in between WT_MUT[Lambda] Tn916 Arms
lacIBBa_Q04121 Version 1 (Component)QPI (B0034.C0012.B0015.R0011)
LacZBBa_I732005 Version 1 (Component)lacZ (encoding beta-galactosidase, full-length)
BBa_K329058BBa_K329058 Version 1 (Component)[KanR] in between WT_MUT[Lambda] Tn916 Arms
LacIBBa_I732100 Version 1 (Component)LacI
BBa_K329053BBa_K329053 Version 1 (Component)[KanR+LacZ] in between WT Tn916 Arms
BBa_K329059BBa_K329059 Version 1 (Component)[KanR] in between WT Tn916 Arms
kanRBBa_P1003 Version 1 (Component)kanamycin resistance cassette
cI HK022BBa_R0050 Version 1 (Component)Promoter (HK022 cI regulated)
LacYBBa_K137001 Version 1 (Component)LacY
BBa_K329045BBa_K329045 Version 1 (Component)Right arm Tn916 - Mutant + Mutant HK022
BBa_K329050BBa_K329050 Version 1 (Component)Left arm Tn916 - Mutant + Mutant HK022
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
BBa_K329044BBa_K329044 Version 1 (Component)Right arm Tn916 - Wild Type + Mutant HK022
BBa_K329049BBa_K329049 Version 1 (Component)Left arm Tn916 - Wild Type + Mutant HK022
BBa_P0412BBa_P0412 Version 1 (Component)PoPS -> LacI [S0150]
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
BBa_K132000BBa_K132000 Version 1 (Component)RBS+kanR+LVA
BBa_K329051BBa_K329051 Version 1 (Component)[KanR + LacZ] cassette
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
BBa_K329041BBa_K329041 Version 1 (Component)Right arm Tn916 - Wild Type
BBa_K329046BBa_K329046 Version 1 (Component)Left arm Tn916 - Wild Type
Zif23BBa_R2000 Version 1 (Component)Promoter, Zif23 regulated, test: between
BBa_K329048BBa_K329048 Version 1 (Component)Left arm Tn916 - Mutant + Mutant Lambda
cI HK022BBa_R1050 Version 1 (Component)Promoter, Standard (HK022 cI regulated) <br>
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K329047BBa_K329047 Version 1 (Component)Left arm Tn916 - Wild Type + Mutant Lambda