SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

lasR
BBa_C0179 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(no LVA)

BBa_M36759
BBa_M36759 Version 1 (Component)
Channelrhodopsin-2 actuator

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

rhlR
BBa_C0071 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (+LVA)

BBa_I746352
BBa_I746352 Version 1 (Component)
delta activator from phiR73 phage

cinr
BBa_C0077 Version 1 (Component)
cinR activator from Rhizobium leguminosarum (+LVA)

rhIR
BBa_C0171 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)

BBa_I746350
BBa_I746350 Version 1 (Component)
ogr activator from P2 phage

BBa_M36760
BBa_M36760 Version 1 (Component)
Channelrhodopsin-2 light-gated Ca2+ channel

ChR2
BBa_S03425 Version 1 (Component)
Channelrhodopsin-2, first 315 amino acids

SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

BBa_I746351
BBa_I746351 Version 1 (Component)
pag activator from PSP3 phage

BBa_K1634003
BBa_K1634003 Version 1 (Component)
ChR2-YFP ( a kind of channelrhodopsin )

BBa_K553003
BBa_K553003 Version 1 (Component)
constitutive production of LasR trans-activator

BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

BBa_M36402
BBa_M36402 Version 1 (Component)
Salicylic Acid to Methyl Salicylate Actuator #2

BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member

BBa_M36534
BBa_M36534 Version 1 (Component)
Arsenate Bioremediation Actuator Plasmid Containing ACR 1 and ACR 2 Genes

BBa_J07009
BBa_J07009 Version 1 (Component)
toxicity-gene activator from Vibrio cholerae

BBa_K1763439
BBa_K1763439 Version 1 (Component)
MaSp1/2[2:1]-12(T7)

BBa_K1763443
BBa_K1763443 Version 1 (Component)
MaSp1/2[1:2]-12(T7)

lexA
BBa_K165020 Version 1 (Component)
LexA Synthetic Activator (untagged)

BBa_K1486007
BBa_K1486007 Version 1 (Component)
IFP[2]

"Eye 2"
BBa_K1080011 Version 1 (Component)
ChlI2

BBa_K1799000
BBa_K1799000 Version 1 (Component)
pLsrA-2

2/3Gly
BBa_K1362467 Version 1 (Component)
other 2/3Gly

BBa_K500001
BBa_K500001 Version 1 (Component)
lignin degradation 2

Lock 2
BBa_J01011 Version 1 (Component)
Riboregulator Lock 2

Key 2
BBa_J01009 Version 1 (Component)
Riboregulator Key 2

BBa_M36770
BBa_M36770 Version 1 (Component)
ClpP Actuator

BBa_K1399007
BBa_K1399007 Version 1 (Component)
GFP (mut3b) with SsrA-DAS+2 degradation tag

BBa_K203111
BBa_K203111 Version 1 (Component)
Constitutive promoter; 2 REU

BBa_K1763440
BBa_K1763440 Version 1 (Component)
MaSp1/2[1:1]-12(1C3)

BBa_I13513
BBa_I13513 Version 1 (Component)
Screening Plasmid 2

BBa_K1150040
BBa_K1150040 Version 1 (Component)
uniCAS RNAimer to Bla Target 2

EFE
BBa_K1065000 Version 1 (Component)
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