Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
amilCPBBa_K592009 Version 1 (Component)amilCP, blue chromoprotein
eforRedBBa_K592012 Version 1 (Component)eforRed, red chromoprotein
BBa_K2142000BBa_K2142000 Version 1 (Component)Composite part containing mazE and red chromoprotein
cjBlueBBa_K592011 Version 1 (Component)cjBlue, green chromoprotein
amilGFPBBa_K592010 Version 1 (Component)amilGFP, yellow chromoprotein
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
aeBlueBBa_K864401 Version 1 (Component)aeBlue blue chromoprotein
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
BBa_K2142007BBa_K2142007 Version 1 (Component)Composite part containing ccdA and blue chromoprotein
BBa_J70315BBa_J70315 Version 1 (Component)Test red bs part
BBa_K1033922BBa_K1033922 Version 1 (Component)meffRed, red chromoprotein (incl RBS)
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_K2142005BBa_K2142005 Version 1 (Component)Composite part containing inducible mazF toxin and dam metylase
BBa_K1033932BBa_K1033932 Version 1 (Component)spisPink, pink chromoprotein
fwYellowBBa_K1033910 Version 1 (Component)fwYellow, yellow chromoprotein
BBa_K1033916BBa_K1033916 Version 1 (Component)amajLime, yellow-green chromoprotein
gfasPurpleBBa_K1033919 Version 1 (Component)gfasPurple, purple chromoprotein
BBa_K1033929BBa_K1033929 Version 1 (Component)aeBlue, blue chromoprotein (incl RBS)
BBa_K1033933BBa_K1033933 Version 1 (Component)asPink, pink chromoprotein
BBa_K416004BBa_K416004 Version 1 (Component)Aga2:(Gly3Ser)4 Linker Composite Part
BBa_K1520500BBa_K1520500 Version 1 (Component)red fluorescent protein
RexBO_10687 Version 1 (Component) BBa_K1218023BBa_K1218023 Version 1 (Component)sacY + red chromoprotein
BBa_K209020BBa_K209020 Version 1 (Component)Aar1 A-B part, RBD (Dictyostelium discoideum)
BBa_J120026BBa_J120026 Version 1 (Component)Composite part containing Yeast promoter along with ADAM17.
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
BBa_K2011408BBa_K2011408 Version 1 (Component)sgrS binding site+ Red Chromoprotein
BBa_K322124BBa_K322124 Version 1 (Component)Red light sensor Cph8 (from Coliroid) with RBS
BBa_J22106BBa_J22106 Version 1 (Component)rec A (SOS) Promoter
BBa_J52015BBa_J52015 Version 1 (Component)composite part
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
BBa_J119395BBa_J119395 Version 1 (Component)tClone Red containing the RS3 Riboswitch
BBa_K872004BBa_K872004 Version 1 (Component)Co2 biosensor composite part
BBa_K624004BBa_K624004 Version 1 (Component)ori+Pmsp1+rep (pYMB essentials)
BBa_K1033920BBa_K1033920 Version 1 (Component)meffRed, red chromoprotein (incl RBS, J23110)
BBa_K1033921BBa_K1033921 Version 1 (Component)meffRed, red chromoprotein (incl RBS, J23106)