Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

LasR+PAI
BBa_R0079 Version 1 (Component)
Promoter (LasR & PAI regulated)

cI lam
BBa_R0051 Version 1 (Component)
promoter (lambda cI regulated)

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette

P(Lac) IQ
BBa_I14032 Version 1 (Component)
promoter P(Lac) IQ

lasR
BBa_C0179 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(no LVA)

lasI
BBa_C0078 Version 1 (Component)
autoinducer synthetase for PAI from Pseudomonas aeruginosa

BBa_F2620
BBa_F2620 Version 1 (Component)
3OC₆HSL -> PoPS Receiver

Las CIO
BBa_I14016 Version 1 (Component)
P(Las) CIO

lasI
BBa_C0178 Version 1 (Component)
autoinducer synthetase for PAI from Pseudomonas aeruginosa (no LVA)

BBa_K1893000
BBa_K1893000 Version 1 (Component)
Las receiver (LasR+pLas)

las TetO
BBa_I14015 Version 1 (Component)
P(Las) TetO

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1375024
BBa_K1375024 Version 1 (Component)
Prhl/las +RBS

BBa_K1893020
BBa_K1893020 Version 1 (Component)
Las receiver with STAR (LasR+pLas+STAR)

lasR
BBa_S03954 Version 1 (Component)
S03156:B0015

BBa_F2622
BBa_F2622 Version 1 (Component)
3OC₆HSL Receiver Device

BBa_K1893001
BBa_K1893001 Version 1 (Component)
Las receiver with GFP reporter (LasR+pLas+GFP)

pLas
BBa_K1893030 Version 1 (Component)
LasR inducible promoter (pLas)

BBa_K1893021
BBa_K1893021 Version 1 (Component)
Las receiver with anti-STAR (LasR+pLas+anti-STAR)

BBa_J28032
BBa_J28032 Version 1 (Component)
las autoinducer

BBa_K876011
BBa_K876011 Version 1 (Component)
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

BBa_K081016
BBa_K081016 Version 1 (Component)
lasI protein generator - PoPS->lasI

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

BBa_J69110
BBa_J69110 Version 1 (Component)
Las Reciever

BBa_K327009
BBa_K327009 Version 1 (Component)
Las receiver

BBa_K553003
BBa_K553003 Version 1 (Component)
constitutive production of LasR trans-activator

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

BBa_K091146
BBa_K091146 Version 1 (Component)
pLas/Lux Hybrid Promoter

BBa_K266005
BBa_K266005 Version 1 (Component)
PAI+LasR -> LasI & AI+LuxR --| LasI

BBa_K772004
BBa_K772004 Version 1 (Component)
AHL regulated PoPS generator: Las receiver device

pLac
BBa_K1638000 Version 1 (Component)
Lac operator

BBa_K557006
BBa_K557006 Version 1 (Component)
lasI+lasR

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

BBa_K266006
BBa_K266006 Version 1 (Component)
PAI+LasR -> LasI+GFP & AI+LuxR --| LasI+GFP

BBa_K726010
BBa_K726010 Version 1 (Component)
LasR+plasR+melA

BBa_F2621
BBa_F2621 Version 1 (Component)
3OC₆HSL Receiver Device