SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_K874120
BBa_K874120 Version 1 (Component)
Methylation Measurement Module (M.ScaI & dual PZF3838 targeted)

Public

BBa_K874000
BBa_K874000 Version 1 (Component)
M.ScaI Methyltransferase

Public

BBa_K874060
BBa_K874060 Version 1 (Component)
Methylation Site (M.ScaI & dual E2C targeted)

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BBa_I20260
BBa_I20260 Version 1 (Component)
Measurement Kit Test of J23101

Public

//cds/enzyme/methylation
cds_enzyme_methylation Version 1 (Collection)

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BBa_K874300
BBa_K874300 Version 1 (Component)
IPTG inducible expression of M.ScaI methyltansferase (IPTG -> M.ScaI) (ScaI silently mutated out)

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//plasmid/measurement
plasmid_measurement Version 1 (Collection)

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pET fusion
BBa_K1122673 Version 1 (Component)
Ethanol production module

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//classic/measurement
classic_measurement Version 1 (Collection)

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//classic/plasmid/measurement
classic_plasmid_measurement Version 1 (Collection)

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BBa_K874200
BBa_K874200 Version 1 (Component)
IPTG inducible PZF targeted methylation and measurement system (dual PZF3838 targeted)

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//classic/measurement/uncategorized
classic_measurement_uncategorized Version 1 (Collection)

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BBa_K835003
BBa_K835003 Version 1 (Component)
Methylation site

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BBa_K874102
BBa_K874102 Version 1 (Component)
IPTG inducible expression of PZF3838, M.ScaI Fusion protein (IPTG -> PZF3838, M.ScaI FP)

Public

BBa_K874100
BBa_K874100 Version 1 (Component)
IPTG inducible expression of M.ScaI methyltransferase (IPTG -> M.ScaI)

Public

BBa_K874101
BBa_K874101 Version 1 (Component)
Arabinose inducible expression of M.ScaI methyltransferase (ARA -> M.ScaI)

Public

C2HP/RGE
BBa_K1442107 Version 1 (Component)
C2HP Testing Module (reverse GFP)

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BBa_K173002
BBa_K173002 Version 1 (Component)
J23118 measurement system

Public

ldhE-Lc
BBa_K1696001 Version 1 (Component)
L-Lactate producing module from Lactobacillus casei

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BBa_K398331
BBa_K398331 Version 1 (Component)
pCaiF-B0032 measurement device

Public

//classic/measurement/o_h
classic_measurement_o_h Version 1 (Collection)

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BBa_K1128001
BBa_K1128001 Version 1 (Component)
Targetted Methylation Assay

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BBa_K874103
BBa_K874103 Version 1 (Component)
Arabinose inducible expression of PZF3838, M.ScaI Fusion protein (ARA -> PZF3838, M.ScaI FP)

Public

Tamura
BBa_K1763444 Version 1 (Component)
Bombyx mori silk co-spinning module

Public

BBa_K510036
BBa_K510036 Version 1 (Component)
Improved Flip Flop (Module II: asRNA)

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BBa_K1532000
BBa_K1532000 Version 1 (Component)
Cla I cutting site (methylation insensitive)

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mCherry
BBa_K678020 Version 1 (Component)
mCherry-module

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BBa_K1051257
BBa_K1051257 Version 1 (Component)
Construct the measurement pathway of K1051206.

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BBa_K1051258
BBa_K1051258 Version 1 (Component)
Construct the measurement pathway of K1051207.

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BBa_K1051259
BBa_K1051259 Version 1 (Component)
Construct the measurement pathway of K1051208.

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BBa_K1371039
BBa_K1371039 Version 1 (Component)
loading module+module(1+2)

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mRFP1
BBa_K678030 Version 1 (Component)
mRFP1-module

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BBa_K2155005
BBa_K2155005 Version 1 (Component)
CBM3b module

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eYFP
BBa_K678009 Version 1 (Component)
eYFP-module

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BBa_K734000
BBa_K734000 Version 1 (Component)
Caffeine demethylation pathway

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BBa_K734001
BBa_K734001 Version 1 (Component)
Theophylline demethylation pathway

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BBa_I4204
BBa_I4204 Version 1 (Component)
Prakash *: Syncronator Cell-Signalling Module

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BBa_J107022
BBa_J107022 Version 1 (Component)
R0061 measurement system

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eGFP-PTS
BBa_K678017 Version 1 (Component)
eGFP-PTS-module

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BBa_K564021
BBa_K564021 Version 1 (Component)
aTC regulated promoter module: aTC--PoPS

Public

fliC_MCS
BBa_K1617000 Version 1 (Component)
Modular Flagellin - FliC_MCS

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eCFP
BBa_K678015 Version 1 (Component)
eCFP-module

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BBa_J107023
BBa_J107023 Version 1 (Component)
R0061 measurement system (with RFP)

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BBa_K1371004
BBa_K1371004 Version 1 (Component)
AT-ACP-L1(loading module)

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BBa_J107012
BBa_J107012 Version 1 (Component)
PlacIQ measurement system (with RFP)

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BBa_K510019
BBa_K510019 Version 1 (Component)
Improved Flip Flop (Module I)

Public

BBa_K1956017
BBa_K1956017 Version 1 (Component)
Noise in Device measurement

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