Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
Las CIOBBa_I14016 Version 1 (Component)P(Las) CIO
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
las TetOBBa_I14015 Version 1 (Component)P(Las) TetO
RFP-BA-BbsBBa_K349003 Version 1 (Component)RFP-BA-BbsI (for construction of BA BioBytes 2.0)
BBa_K2148010BBa_K2148010 Version 1 (Component)mRasberry C.reinhardtii-CO far-red FP
BBa_K748002BBa_K748002 Version 1 (Component)Truncated lysostaphin coding sequence. Lysostaphin has has a specific lytic action against S.aureus.
ybaSBO_29223 Version 1 (Component) YbaSBO_10731 Version 1 (Component) Kan-BA-BbsBBa_K349010 Version 1 (Component)KanR-BA-BbsI (for construction of BA BioBytes 2.0)
RFP-BA-BsaBBa_K349002 Version 1 (Component)RFP-BA-BsaI (for construction of BA BioBytes 2.0)
BACBBa_J61031 Version 1 (Component)Amplifiable BAC plasmid
BBa_I750016BBa_I750016 Version 1 (Component)Gas Vesicle polycistonic gene
BBa_K511003BBa_K511003 Version 1 (Component)UAS-Gal4 Promoter MammoBlock
ssrA(DAS+4BBa_K1075020 Version 1 (Component)E. coli ssrA(DAS+4)
BaxBBa_K177027 Version 1 (Component)bax coding sequence
DASBBa_K365007 Version 1 (Component)DAS tag
BBa_J28032BBa_J28032 Version 1 (Component)las autoinducer
KanR-BA-BsBBa_K349008 Version 1 (Component)KanR-BA-BsaI (for construction of BA BioBytes 2.0)
Gal4-UASBBa_K1884004 Version 1 (Component)Upstream activating sequence
BBa_J28030BBa_J28030 Version 1 (Component)las autoinducer, P(BAD)/araC control
Bs difBBa_K316002 Version 1 (Component)dif excision site from B. subtilis
UAS-LacZBBa_K758005 Version 1 (Component)UAS LacZ, this part expresses LacZ in the presence of GAL4
UAS-EGFPBBa_K758006 Version 1 (Component)UAS EGFP, this part expresses EGFP in the presence of GAL4 protein.
BBa_K1399007BBa_K1399007 Version 1 (Component)GFP (mut3b) with SsrA-DAS+2 degradation tag
BSBBa_K566002 Version 1 (Component)Biphasic switch
BBa_I51000BBa_I51000 Version 1 (Component)BioBrick base vector, as originally designed
BBa_K1399008BBa_K1399008 Version 1 (Component)GFP (mut3b) with DAS-ssrA degradation tag
Las sensorBBa_K1157016 Version 1 (Component)Pc-LasR-pLas-BFP
BBa_K1375019BBa_K1375019 Version 1 (Component)Prhl/las +RBS+eforRed