SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

mCh
BBa_J176005 Version 1 (Component)
mCh

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

fshPCD
BBa_J176002 Version 1 (Component)
fshPCD

ShortLinke
BBa_K243004 Version 1 (Component)
Short Linker (Gly-Gly-Ser-Gly)

BBa_I766234
BBa_I766234 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser-Ent5p-ENTH PH Domain

LongLinker
BBa_K243006 Version 1 (Component)
Long Linker (Gly-Gly-Ser-Gly)x3

MiddleLink
BBa_K243005 Version 1 (Component)
Middle Linker ( Gly-Gly-Ser-Gly)x2

BBa_I766336
BBa_I766336 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser ING2 PH Domain

BBa_I766231
BBa_I766231 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser FYVE-EEA1 PH Domain

BBa_I766232
BBa_I766232 Version 1 (Component)
Ser-Gly-Ser-Gly-Ser-PLCdelta PH Domain

VP64
BBa_J176013 Version 1 (Component)
VP64

PLflex
BBa_J176040 Version 1 (Component)
PLflex

BBa_K197029
BBa_K197029 Version 1 (Component)
gly-ser-repeats

BBa_J176130
BBa_J176130 Version 1 (Component)
PLflex4

BBa_K165007
BBa_K165007 Version 1 (Component)
Gli-1 DNA-binding domain

BBa_J176132
BBa_J176132 Version 1 (Component)
PLrigid4

BBa_K1797016
BBa_K1797016 Version 1 (Component)
dCas9-Long Linker (Gly-Gly-Ser-Gly)x3-Flp

mRFP sel.
BBa_K1362422 Version 1 (Component)
mRFP selection marker with outward BsaI restriction sites

RFC105 CN
BBa_K1362418 Version 1 (Component)
N-terminal GG-linker overhang <u>GGTG</u>=Gly+1/3Gly RFC[105] overhang CN

BBa_K641005
BBa_K641005 Version 1 (Component)
ToxR with nhe1 and gly-ser linkers

BBa_K1797015
BBa_K1797015 Version 1 (Component)
dCas9-Long Linker (Gly-Gly-Ser-Gly)x3-Bxb1 gp35

RFC105 NC
BBa_K1362417 Version 1 (Component)
C-terminal GG-linker overhang GG<u>TGGT</u>=Gly+Gly RFC[105] overhang NC

RFC105 A
BBa_K1362414 Version 1 (Component)
N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A

BBa_K656006
BBa_K656006 Version 1 (Component)
IPTG Reporter Using Cohesin-Gly-Ser-Gly-Cohesin

BBa_J23070
BBa_J23070 Version 1 (Component)
Ser2 derived key

BBa_K259008
BBa_K259008 Version 1 (Component)
BioScaffold Linker - Removes Stop Codons & scars & replaces with a Gly-Ser linker

BBa_K259009
BBa_K259009 Version 1 (Component)
BioScaffold Linker - Removes Stop Codons & scars & replaces with a Gly-Ser linker

BBa_K1462503
BBa_K1462503 Version 1 (Component)
SH3 domain + Linker

BioScaffol
BBa_K259004 Version 1 (Component)
BioScaffold Linker - Removes Stop Codons & scars & replaces with a Gly-Ser linker

BioScaffol
BBa_K259002 Version 1 (Component)
BioScaffold Linker - Removes Stop Codons & scars & replaces with a Gly-Ser linker

BBa_I766002
BBa_I766002 Version 1 (Component)
YopJ, Irrev. MAPKK Ser/Thr Acetylase

BBa_K590082
BBa_K590082 Version 1 (Component)
Ser-Glylinker

BBa_K624001
BBa_K624001 Version 1 (Component)
tetR+RBS+GFP+ter

BBa_K165006
BBa_K165006 Version 1 (Component)
Zif268-HIV DNA-binding domain

BBa_K300002
BBa_K300002 Version 1 (Component)
Phasin (PhaP) - head domain

Gly+1/3Leu
BBa_K1362478 Version 1 (Component)
Gly+1/3Leu

Fok_a
BBa_K243000 Version 1 (Component)
Protein domain (active) of the restriction endonuclease FokI