Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_I712004
BBa_I712004 Version 1 (Component)
CMV promoter

BBa_K747096
BBa_K747096 Version 1 (Component)
CMV-promoter

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

CMV
BBa_J176027 Version 1 (Component)
CMV

BBa_K364304
BBa_K364304 Version 1 (Component)
TRE-CMV

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

CmR
BBa_J61000 Version 1 (Component)
chloramphenicol resistance cassette

CmR
BBa_J31005 Version 1 (Component)
chloramphenicol acetyltransferase (forwards, CmF) [cf. BBa_J31004]

cmR
BBa_P1004 Version 1 (Component)
chloramphenicol resistance cassette

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

BBa_I712082
BBa_I712082 Version 1 (Component)
CMV promoter - CD4 (shortened)

BBa_J52038
BBa_J52038 Version 1 (Component)
CMV + Rluc

BBa_I712669
BBa_I712669 Version 1 (Component)
CMV - mCer

BBa_K404102
BBa_K404102 Version 1 (Component)
CMV promoter

CMV
BBa_K415514 Version 1 (Component)
pCMV L4R1 MammoBlock Entry Vector

BBa_J52040
BBa_J52040 Version 1 (Component)
CMV + GFP-PEST191

BBa_J52034
BBa_J52034 Version 1 (Component)
CMV promoter

BBa_K1440066
BBa_K1440066 Version 1 (Component)
reverse CMV->reverse RFP->pTRE->shRNA

BBa_J176094
BBa_J176094 Version 1 (Component)
CMV-CFP

BBa_J52039
BBa_J52039 Version 1 (Component)
CMV + Rluc-linker-PEST191

BBa_K368001
BBa_K368001 Version 1 (Component)
minimal CMV Promoter with TRE (tet responsible element)

CMV AID pA
BBa_K929000 Version 1 (Component)
AID with CMV promoter and hGH-polyadenylation signal sequence

BBa_K929002
BBa_K929002 Version 1 (Component)
modified AID with CMV and hGH-polyA

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_J176097
BBa_J176097 Version 1 (Component)
CMV-5xGal4-CFP

BBa_I712088
BBa_I712088 Version 1 (Component)
CMV - CD4(shortened) - Cub - GFP

BBa_J176099
BBa_J176099 Version 1 (Component)
CMV-10xGal4-CFP