Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_K415506
BBa_K415506 Version 1 (Component)
pTRE-Tight L4R1 MammoBlock

BBa_J09855
BBa_J09855 Version 1 (Component)
Constitutive luxR device with pLuxR

BBa_K511102
BBa_K511102 Version 1 (Component)
mKate MammoBlock

BBa_K779607
BBa_K779607 Version 1 (Component)
Tre-Tight-mKate MammoBlock Device

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_K779312
BBa_K779312 Version 1 (Component)
mKate-HH - Hammerhead attached behind mKate MammoBlock

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K779311
BBa_K779311 Version 1 (Component)
HH-mKate - Hammerhead attached to front of mKate MammoBlock

BBa_F1610
BBa_F1610 Version 1 (Component)
3OC₆HSL Sender Device

BBa_F2622
BBa_F2622 Version 1 (Component)
3OC₆HSL Receiver Device

BBa_K779202
BBa_K779202 Version 1 (Component)
TRE-Tight MammoBlock

BBa_K511815
BBa_K511815 Version 1 (Component)
Inducible Red Fluorescent Protein Generator (TRE-Tight-mKate) MammoBlock Device

BBa_K779304
BBa_K779304 Version 1 (Component)
mKate MammoBlock

BBa_K779601
BBa_K779601 Version 1 (Component)
Hef1a-mKate MammoBlock Device

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

BBa_K779608
BBa_K779608 Version 1 (Component)
Hef1a-HH-mKate Mammoblock Device

BBa_K779609
BBa_K779609 Version 1 (Component)
Hef1a-mKate-HH Mammoblock Device

BBa_K2100006
BBa_K2100006 Version 1 (Component)
pENTR mKate

BBa_K779200
BBa_K779200 Version 1 (Component)
Hef1A MammoBlock

BBa_I763026
BBa_I763026 Version 1 (Component)
LacI coding device regulated by pTetR

BBa_K511911
BBa_K511911 Version 1 (Component)
Inducible rtTA Transactivator Generator (TRE-Tight-rtTA3) MammoBlock Device

BBa_K511909
BBa_K511909 Version 1 (Component)
Inducible LacI Repressor Generator (TRE-Tight-LacI) MammoBlock Device

BBa_K511004
BBa_K511004 Version 1 (Component)
TRE-Tight-LacOid Promoter MammoBlock

BBa_K511801
BBa_K511801 Version 1 (Component)
Red Fluorescent Protein Generator (Hef1a-mKate) MammoBlock Device

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

BBa_K779314
BBa_K779314 Version 1 (Component)
mKate-HHm - Repressible hammerhead behind mKate MammoBlock

BBa_K511816
BBa_K511816 Version 1 (Component)
Inducible Blue Fluorescent Protein Generator (TRE-Tight-EBFP2) MammoBlock Device

BBa_I741005
BBa_I741005 Version 1 (Component)
XylR Transcriptional Regulator Right Facing

BBa_K511003
BBa_K511003 Version 1 (Component)
UAS-Gal4 Promoter MammoBlock

BBa_F2621
BBa_F2621 Version 1 (Component)
3OC₆HSL Receiver Device