Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
ATGATG Version 1 (Component) SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
OmpRBBa_R0082 Version 1 (Component)Promoter (OmpR, positive)
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_F2620BBa_F2620 Version 1 (Component)3OC<sub>6</sub>HSL -> PoPS Receiver
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
HABBa_I712008 Version 1 (Component)HA affinity tag
BBa_K1989008BBa_K1989008 Version 1 (Component)Triple spytag with SUP, His-tag, FlAsH-tag and signal peptide OmpA
NLSBBa_J176008 Version 1 (Component)NLS
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
PESTBBa_J176018 Version 1 (Component)PEST
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
BBa_K1989027BBa_K1989027 Version 1 (Component)Triple spytag with mSA, His-tag , FlAsH-tag and signal peptide OmpA
BBa_K1989010BBa_K1989010 Version 1 (Component)Triple spytag with SUP, His-tag ,FlAsH-tag and signal peptide LTIIB
BBa_K1989009BBa_K1989009 Version 1 (Component)Triple spytag with SUP, His-tag, FlAsH-tag and signal peptide PhoA
BBa_K1989011BBa_K1989011 Version 1 (Component)Triple spytag with SUP, His-tag , flash tag and signal peptide PelB
BBa_K1989015BBa_K1989015 Version 1 (Component)Triple spytag with SUP, FlAsH-tag and signal peptide YjfA
BBa_K1989012BBa_K1989012 Version 1 (Component)Triple spytag with SUP, FlAsH-tag and signal peptide ImdA
BBa_K1989014BBa_K1989014 Version 1 (Component)Triple spytag with SUP, FlAsH-tag and signal peptide SacB
BBa_K1989016BBa_K1989016 Version 1 (Component)Triple spytag with SUP, FlAsH-tag and signal peptide LipA
BBa_K1989013BBa_K1989013 Version 1 (Component)Triple spytag with SUP, FlAsH-tag and signal peptide NprE
NLSmycSTOPBBa_J176031 Version 1 (Component)NLS myc stop
BBa_K1989030BBa_K1989030 Version 1 (Component)Triple spytag with mSA, His-tag , FlAsH-tag and signal peptide PelB
BBa_K1989028BBa_K1989028 Version 1 (Component)Triple spytag with mSA, His-tag , FlAsH-tag and signal peptide PhoA
BBa_K1989029BBa_K1989029 Version 1 (Component)Triple spytag with mSA, His-tag , FlAsH-tag and signal peptide LTIIB
OmpRBBa_R0084 Version 1 (Component)Promoter (OmpR, positive)
OmpABBa_K103006 Version 1 (Component)OmpA outer membrane protein A fused to linker; displays proteins on cell surface
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
BBa_K1989035BBa_K1989035 Version 1 (Component)Triple spytag with mSA, FlAsH-tag and signal peptide LipA
BBa_K1989033BBa_K1989033 Version 1 (Component)Triple spytag with mSA, FlAsH-tag and signal peptide SacB
BBa_K1989034BBa_K1989034 Version 1 (Component)Triple spytag with mSA, FlAsH-tag and signal peptide YjfA
BBa_K1989031BBa_K1989031 Version 1 (Component)Triple spytag with mSA, FlAsH-tag and signal peptide ImdA
BBa_K1989032BBa_K1989032 Version 1 (Component)Triple spytag with mSA, FlAsH-tag and signal peptide NprE
BBa_K1989017BBa_K1989017 Version 1 (Component)Triplespycatcher with His-tag , FlAsH-tag and signal peptide OmpA
BBa_J04051BBa_J04051 Version 1 (Component)RFP with tag