SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K233320BBa_K233320 Version 1 (Component)Turing Machine- Unary Adder
BBa_K233321BBa_K233321 Version 1 (Component)Turing Machine - Unary Adder 2
BBa_K118012BBa_K118012 Version 1 (Component)Synthetic ribosome binding site added by Son of Babel procedure
BBa_K233325BBa_K233325 Version 1 (Component)The complete turing machine construct
lacZ aBBa_E0033 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
BBa_J37011BBa_J37011 Version 1 (Component)Time Machine
BBa_K1568002BBa_K1568002 Version 1 (Component)test for production machine
BBa_J70406BBa_J70406 Version 1 (Component)R0010.J70400 (Ribosome Replacer or Tag Adder)
BBa_K1499500BBa_K1499500 Version 1 (Component)quorum sensing machinery that activates GFP expression
BBa_K844007BBa_K844007 Version 1 (Component)Spider Silk 1x Subunit "F" (Fewest tRNA codon optimized) with Met (ATG) added
BBa_K1051303BBa_K1051303 Version 1 (Component)clb6 promoter (during G1 phase)
BBa_J37034BBa_J37034 Version 1 (Component)LuxI added to GFP
BBa_K844008BBa_K844008 Version 1 (Component)Spider Silk 1x Subunit "B" (Balanced tRNA codon optimized) with Met (ATG) added
BBa_J70405BBa_J70405 Version 1 (Component)R0010.J70399 (Ribosome Replacer or Tag Adder)
BBa_K537017BBa_K537017 Version 1 (Component)Send and receive machine (with theophylline riboswitch type 1)
BBa_K537018BBa_K537018 Version 1 (Component)Send and receive machine (with theophylline riboswitch type 2)
BBa_K1614016BBa_K1614016 Version 1 (Component)Hammerhead Ribozyme and Malchite Green Aptamer in BBF RFC 110 transcription cassette
BBa_K1051301BBa_K1051301 Version 1 (Component)clb2 promoter (during G2 phase)
BBa_V1021BBa_V1021 Version 1 (Component)MachI
BBa_E7103BBa_E7103 Version 1 (Component)Reporter Device Powered by the Virtual Machine (VM1.0)
BBa_K1051302BBa_K1051302 Version 1 (Component)clb5 promoter (during G1 phase)
BBa_I2045BBa_I2045 Version 1 (Component)mCherry & GFP expression device for testing a biological virtual machine
BBa_I2047BBa_I2047 Version 1 (Component)mCherry & GFP expression device for testing a biological virtual machine
BBa_I2046BBa_I2046 Version 1 (Component)mCherry & GFP expression device for testing a biological virtual machine
BBa_K390000BBa_K390000 Version 1 (Component)pSB1A3_Int (BamHI, XhoI, NdeI, NheI added)
BBa_I724005BBa_I724005 Version 1 (Component)Elowitz repressilator with added degradation tag
BBa_E0035BBa_E0035 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
BBa_K855004BBa_K855004 Version 1 (Component)pvdQ gene form pseudomonas aeruginosa PAO1 with his tag added before stop condon
BBa_J34000BBa_J34000 Version 1 (Component)Half Adder (HA), 2x PoPS input, 2x PoPS output
BBa_I20283BBa_I20283 Version 1 (Component)Adaptable Vaccine Antigen Secretor
BBa_J70651BBa_J70651 Version 1 (Component)J70590 cut with BsaXI and with (6hisintermediatelinker) added
BBa_K1195004BBa_K1195004 Version 1 (Component)Cro from Lamda phage with shine delgarno added.
BBa_K359008BBa_K359008 Version 1 (Component)AIP generator and sensor, with an added RFP reporter
BBa_J70660BBa_J70660 Version 1 (Component)J70577 cut with BsaXI and with 6his inserts (J70564-fi) added
BBa_J70631BBa_J70631 Version 1 (Component)R0010-J70630, rbs and maltose binding protein added to J70423
BBa_J70596BBa_J70596 Version 1 (Component)J70577 cut with BsaXI and with 6his inserts (J70564-fi) added
BBa_J70597BBa_J70597 Version 1 (Component)J70577 cut with BsaXI and with 6his inserts (J70564-fi) added
BBa_J70605BBa_J70605 Version 1 (Component)J70590 cut with BsaXI and with GSGSGS inserts (J70556-fi,ri) added
BBa_J70606BBa_J70606 Version 1 (Component)J70590 cut with BsaXI and with dead fusion inserts (J70556d-fi,ri) added
BBa_K1499503BBa_K1499503 Version 1 (Component)quorum sensing machinery that activates GFP expression with extra terminator
Smt3-mDNMTBBa_K1362500 Version 1 (Component)Smt3-Murine DNMT1(731-1602) fusion protein (with His6)
BBa_J70604BBa_J70604 Version 1 (Component)J70589 cut with BsaXI and with rbs, 6his inserts (J70559-f1i,f2i,r2i,r2i) added
mDNMT1(731BBa_K1362450 Version 1 (Component)Murine DNMT1, residues 731-1602
BBa_K496001BBa_K496001 Version 1 (Component)trying to add
BBa_K2121005BBa_K2121005 Version 1 (Component)Taurine Inducible Promoter
BBa_K1913007BBa_K1913007 Version 1 (Component)434- and lambda cI operon for tuning protein balance