Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SEGA021SEGA021 Version 1 (Component)natural linear DNA.
SEGA022SEGA022 Version 1 (Component)natural linear DNA.
BBa_K1896004BBa_K1896004 Version 1 (Component)linker-Streptavidin-His (tetrameric)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
BBa_K1462502BBa_K1462502 Version 1 (Component)PDZ domain + Linker
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
BBa_K1462503BBa_K1462503 Version 1 (Component)SH3 domain + Linker
BBa_K1462501BBa_K1462501 Version 1 (Component)GBD domian + Linker
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
HisBBa_K157011 Version 1 (Component)His affinity tag; Freiburg standard
BBa_K1321339BBa_K1321339 Version 1 (Component)CBDcenA+Linker, RFC 25 standard
BBa_K323107BBa_K323107 Version 1 (Component)PBSII zinc finger + linker
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
linkerBBa_K157009 Version 1 (Component)Split fluorophore linker; Freiburg standard
BBa_B0053BBa_B0053 Version 1 (Component)Terminator (His)
BBa_K283010BBa_K283010 Version 1 (Component)Streptavidin
BBa_K1054007BBa_K1054007 Version 1 (Component)Streptavidin with linker
BBa_K215001BBa_K215001 Version 1 (Component)Secretion Signal and Streptavidin Binding Tags
BBa_K215261BBa_K215261 Version 1 (Component)Lpp + 5tmr OmpA + GS Linker + TEV site + WT Streptavidin + 6His
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
BBa_K323105BBa_K323105 Version 1 (Component)Zif268 zinc finger + linker
BBa_J36841BBa_J36841 Version 1 (Component)Streptavidin, wild-type core + His6 tag (no start codon)
BBa_J36846BBa_J36846 Version 1 (Component)Lpp-OmpA(46-159)-Streptavidin wild-type + His6
5xGSBBa_J18922 Version 1 (Component)10aa [GS]x linker
BBa_K215260BBa_K215260 Version 1 (Component)Lpp + 1tmr OmpA + GS Linker + TEV site + WT Streptavidin + 6His
BBa_K1486004BBa_K1486004 Version 1 (Component)flexible linker 2x (GGGGS)
linkerBBa_K365005 Version 1 (Component)20 aa linker RFC-25 (fusion standard Freiburg)
BBa_J36843BBa_J36843 Version 1 (Component)Streptavidin, single-chain dimer + His6 tag (no start codon)
BBa_J52026BBa_J52026 Version 1 (Component)dnMyD88-linker-GFP
OmpABBa_K103006 Version 1 (Component)OmpA outer membrane protein A fused to linker; displays proteins on cell surface
BBa_K323108BBa_K323108 Version 1 (Component)Jazz zinc finger + linker
BBa_K323109BBa_K323109 Version 1 (Component)Blues zinc finger + linker
BBa_K364167BBa_K364167 Version 1 (Component)Zn Finger Linker segment
eGFP+HisBBa_K193202 Version 1 (Component)EGFP(enhanced Green Fluorescent Protein) with His tag
His6BBa_K1362431 Version 1 (Component)N-terminal His6 (C-Intein)
BBa_J52012BBa_J52012 Version 1 (Component)Rluc-linker-PEST191