ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K2146004BBa_K2146004 Version 1 (Component)pWH1266 ori-Ptac-lacOc-ampC ADC-33-pSB1C3
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_K2146006BBa_K2146006 Version 1 (Component)pWH1266 ori-Ptac-lacOc-ampC ADC-33-T1-lacI-PT5-gusA-T2-pSB1C3
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB4C1pSB4C1 Version 1 (Component)pCK01 converted into BioBrick vector (formerly BBa_I739202)
pSB1C4pSB1C4 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_K2146005BBa_K2146005 Version 1 (Component)pWH1266 ori-Ptac-lacOc-aph(3')-VIa
BBa_K2146001BBa_K2146001 Version 1 (Component)pWH1266 ori-pSB1C3
pSB3K3pSB3K3 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB2K3pSB2K3 Version 1 (Component)Inducible copy number BioBrick plasmid
BBa_K2146003BBa_K2146003 Version 1 (Component)pWH1266 ori-specR-pSB1C3
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
ADCBBa_K590031 Version 1 (Component)Aldehyde Decarbonylase (ADC) - Synechococcus elongatus PCC7942
pLacBBa_K1638000 Version 1 (Component)Lac operator
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
pSB1AC0pSB1AC0 Version 1 (Component)pSB1AC0
pSB6C5pSB6C5 Version 1 (Component)pBR322 Derived Chloramphenicol Backbone
pSB3C5pSB3C5 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4C5pSB4C5 Version 1 (Component)Low copy BioBrick standard vector
f1 oriBBa_K314110 Version 1 (Component)f1 origin
BBa_K2146000BBa_K2146000 Version 1 (Component)Plac-lacO-rfp-TT-pSB1C3
BBa_K624004BBa_K624004 Version 1 (Component)ori+Pmsp1+rep (pYMB essentials)
BBa_J119321BBa_J119321 Version 1 (Component)pTac mutant -33 G