iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
aiiABBa_C0060 Version 1 (Component)autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K2110013BBa_K2110013 Version 1 (Component)PETase enzyme after codon optimization for bacillus subtilis
BBa_K090505BBa_K090505 Version 1 (Component)''Bacillus subtilis'' consensus RBS
BBa_K2110014BBa_K2110014 Version 1 (Component)MHETase enzyme after codon optimization for bacillus subtilis
FurBO_11498 Version 1 (Component) RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
EcoRIEcoRI Version 1 (Component) NheINheI Version 1 (Component) PacIPacI Version 1 (Component) SpeISpeI Version 1 (Component) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
R37BBa_K780002 Version 1 (Component)Strong RBS for Bacillus Subtilis
Pveg-spoVGBBa_K143053 Version 1 (Component)Promoter Pveg and RBS spoVG for B. subtilis
PvegBBa_K143012 Version 1 (Component)Promoter veg a constitutive promoter for B. subtilis
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
penIBBa_C0074 Version 1 (Component)penI repressor from Bacillus licheniformis (+LVA)
BBa_K606017BBa_K606017 Version 1 (Component)T7 polymerase expression casette for Bacillus Subtilis
BBa_I718005BBa_I718005 Version 1 (Component)DapA Bacillus Subtilis
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
BBa_K780000BBa_K780000 Version 1 (Component)Terminator for Bacillus subtilis
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_K1336003BBa_K1336003 Version 1 (Component)Dye-decolourising peroxidase from Bacillus subtilis
BBa_K1351011BBa_K1351011 Version 1 (Component)Bacillus subtilis sortase YhcS
BBa_K823028BBa_K823028 Version 1 (Component)luc luciferase + RBS, codon optimized for Bacillus subtilis
BBa_K912003BBa_K912003 Version 1 (Component)Bacillus subtilus phytase
BBa_K1937001BBa_K1937001 Version 1 (Component)pSBBsOK-mini, a small replicative plasmid for Bacillus subtilis
BBa_K305011BBa_K305011 Version 1 (Component)Subtilin inducible expression plasmid for Bacillus subtilis
BBa_K780003BBa_K780003 Version 1 (Component)Strong constitutive promoter for Bacillus subtilis
aiiABBa_C0160 Version 1 (Component)autoinducer inactivation enzyme aiiA (no LVA)
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K912004BBa_K912004 Version 1 (Component)Bacillus subtilus phytase
amyE 5 ISBBa_K143001 Version 1 (Component)5??? Integration Sequence for the amyE locus of B. subtilis