iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
VF2BBa_G00100 Version 1 (Component)Forward primer for sequencing/amplifying BioBrick parts (VF2)
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
VRBBa_G00102 Version 1 (Component)Reverse BioBrick primer annealing site (VR binding site)
BBa_B0025BBa_B0025 Version 1 (Component)double terminator (B0015), reversed
VRBBa_G00101 Version 1 (Component)Reverse primer for sequencing/amplifying BioBrick parts (VR)
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
FurBO_11498 Version 1 (Component) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BioBrick-rBBa_G1005 Version 1 (Component)Reverse BioBrick suffix primer for amplifying BioBrick parts (BioBrick-r)
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
PBS_F24PBS_F24 Version 1 (Component) mRFPrBBa_J31008 Version 1 (Component)RFP reverse
BioBrick-fBBa_G1004 Version 1 (Component)Forward BioBrick prefix primer for amplifying BioBrick parts (BioBrick-f)
Prefix-RBBa_G1001 Version 1 (Component)Reverse primer for amplifying BioBrick plasmid backbones by PCR (Prefix-r)
Prefix-RBBa_G1003 Version 1 (Component)Reverse primer for amplifying BioBrick plasmid backbones by PCR (Prefix-r)
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_I13452BBa_I13452 Version 1 (Component)Adds another BioBrick site
BBa_B0024BBa_B0024 Version 1 (Component)double terminator (B0012-B0011), reversed
GFP-rBBa_G00201 Version 1 (Component)Reverse primer for sequencing composite parts; binds to GFP (BBa_E0040)
VR2BBa_J18907 Version 1 (Component)VR2: Reverse Primer to pSB1 Biobrick Vectors (optimized VR)
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
Suffix-FBBa_G1000 Version 1 (Component)Forward primer for amplifying BioBrick plasmid backbones by PCR (Suffix-f)
BBa_J44002BBa_J44002 Version 1 (Component)pBAD reverse
Suffix-FBBa_G1002 Version 1 (Component)Forward primer for amplifying BioBrick plasmid backbones by PCR (Suffix-f)
BBa_K187034BBa_K187034 Version 1 (Component)pAB/BA reverse primer for sequencing
<- BsaIBBa_K1362423 Version 1 (Component)BsaI reverse restriction site for RFC[105] cloning
BBa_K228009BBa_K228009 Version 1 (Component)AraC protein(reversed sequence) and Pbad promoter
BBa_J61016BBa_J61016 Version 1 (Component)Biobrick converter for BamHI-part-EcoRI
CFP/YFP-fBBa_G00200 Version 1 (Component)Forward primer for sequencing composite parts; binds to CFP/YFP (BBa_E0020/22, BBa_E0030/32)
BBa_K228004BBa_K228004 Version 1 (Component)NahR( reverse) - salicylate promoter
VRccdBBBa_K176058 Version 1 (Component)Reverse sequencing primer binds to ccdB 5prime terminal (VRccdB)
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
BBa_K1813019BBa_K1813019 Version 1 (Component)LacI Repressor Reversed