Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
TraJFBBa_J01000 Version 1 (Component)TraJF controls conjugative transfer in F plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
TraJRBBa_J01001 Version 1 (Component)TraJr protein (controls conjugative transfer in RP4 plasmid)
BBa_K873003BBa_K873003 Version 1 (Component)conjugative transfer of RFG
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
BBa_I13507BBa_I13507 Version 1 (Component)Screening plasmid intermediate
OriTFBBa_J01002 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
BBa_I714030BBa_I714030 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
BBa_I13504BBa_I13504 Version 1 (Component)Screening plasmid intermediate
BBa_J01140BBa_J01140 Version 1 (Component)F-plasmid, no OriTf, TraJf regions
BBa_J01077BBa_J01077 Version 1 (Component)F plasmid (x-OriT, x-TraJ)
BBa_K873013BBa_K873013 Version 1 (Component)cujugative transfer death gene
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K510000BBa_K510000 Version 1 (Component)pUC18Sfi-miniTn7BB-Gm
B&TraJ FBBa_S03357 Version 1 (Component)B0034 connected to TraJ F
BBa_I714031BBa_I714031 Version 1 (Component)OriT-R (Origin of Transfer for the R751-plasmid nic region)
F plasmidBBa_I50000 Version 1 (Component)F plasmid backbone with BioBrick sites removed.
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
StrRBS.TraBBa_J01021 Version 1 (Component)[StrRBS][TraJR]
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_M45125BBa_M45125 Version 1 (Component)F-Plasmid OriT with Autolysin for Cell Death Induced Conjugation
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J61002BBa_J61002 Version 1 (Component)EX-Ptet-S-rbsRFP-P "RFP reporter"
BBa_J01052BBa_J01052 Version 1 (Component)[StrRBS][TraJF]
BBa_J01023BBa_J01023 Version 1 (Component)[pRM TraJR] = [pRM][StrRBS][TraJR]
[pBad/araCBBa_J01053 Version 1 (Component)[pBad/araC][StrRBS][TraJF]
OriT-RP4BBa_K125320 Version 1 (Component)OriT-RP4 (Origin of transfer for the RP4 plasmid)
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_J23000BBa_J23000 Version 1 (Component)[RBS][TraJf][TT]
BBa_K284033BBa_K284033 Version 1 (Component)finP misc_RNA from Plasmid F
BBa_K1773003BBa_K1773003 Version 1 (Component)I-F type CRISPR-Cas Cas3 gene
BBa_K109550BBa_K109550 Version 1 (Component)Bacterial conjugative regulator KorA