Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

p15A
BBa_I50032 Version 1 (Component)
p15A replication origin

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

R6K
BBa_J61001 Version 1 (Component)
[R6K] Origin of replication

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

pir
BBa_I716102 Version 1 (Component)
pir (Induces the R6K Origin)

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_K617003
BBa_K617003 Version 1 (Component)
R6K origin of replication

BBa_I50050
BBa_I50050 Version 1 (Component)
R6K replication origin

R6K ori
BBa_K300998 Version 1 (Component)
[R6K] Origin of replication (rev)

BBa_I714031
BBa_I714031 Version 1 (Component)
OriT-R (Origin of Transfer for the R751-plasmid nic region)

BBa_J72208
BBa_J72208 Version 1 (Component)
Kanamycin resistant BAC with R6K origin

BBa_K249001
BBa_K249001 Version 1 (Component)
Arabinose Induced Inverter

OriTF
BBa_J01002 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

BBa_J37019
BBa_J37019 Version 1 (Component)
AHL induced LuxR generator

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K300008
BBa_K300008 Version 1 (Component)
Cm resistance and R6K replication origin

BBa_J72003
BBa_J72003 Version 1 (Component)
{R6K} conditional origin of replication in BBb

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_I714030
BBa_I714030 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

PrFe
BBa_J3902 Version 1 (Component)
PrFe (PI + PII rus operon)

pSC101
BBa_I50042 Version 1 (Component)
pSC101 origin of replication

BBa_K808011
BBa_K808011 Version 1 (Component)
tphA1: reduces the tphA2A3 complex

BBa_K125502
BBa_K125502 Version 1 (Component)
phaB BioPlastic polyhydroxybutyrate synthesis pathway (origin PCC6803 slr1993)

BBa_K607035
BBa_K607035 Version 1 (Component)
pUC18 replication origin

OriT-RP4
BBa_K125320 Version 1 (Component)
OriT-RP4 (Origin of transfer for the RP4 plasmid)

BBa_J72210
BBa_J72210 Version 1 (Component)
Kanamycin resistant BAC with R6K origin, pGlpT 5' of cloning site

BBa_K332033
BBa_K332033 Version 1 (Component)
37&#8451; induced RBS + tetR + double terminator

BBa_K737023
BBa_K737023 Version 1 (Component)
Promoter that can be induced by phosphate.

Pvir
BBa_K389003 Version 1 (Component)
virB promoter

Pr
BBa_I723018 Version 1 (Component)
Pr (promoter for XylR)

BBa_J61026
BBa_J61026 Version 1 (Component)
[FRT][R6K]